Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0677 ATGCTATCGGCGTCATCTTTGAGAATAAGCAAAGATGAATTTGAAAGCCAGAGAGAGATGGAGGGCTTGGGGATGGACGTGGGCGACCACTTTGCGGAATTTTCCGAAGGGAATTTATTGGAAAGCTTCATCGATTTTGACGCGTTTTTTGTTGGCGACGGAGACGTGTTGCCGGAATTGGAGATGGACCCCGAAATCCTCGCTGAATTCTCCGCCGGGGAGACTATGAACTCCTCCTTGGCTTCACTGGATAATCAGAATATTAGTGATAAGGCTACGAATAAAGAAGAGTACGAGAATAAAGTTTGTTCGGATTCGGGTTCGGGTTCAGGCTCAGGTATATCGGATTCGAATTCGGGTGGAGGAGGAGATGGAGAGGAGATACTGAAGCAAGCTAGCAATAATAGCAAAGCAAAGAAATCCAAAGCTTCTCAAGgaaagagaaaagtgaagaaggtGGATTGGACACCAGAATTGCACAGGCGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGACAAGGCAGTGCCTTCCAAGATTCTAGAGATTATGGGAATTGCTTGTCTAACTCGCCATAACATTGCCAGCCACCTCCAAAAATATCGATCGCATAGGAAGCATCTGGTAGCGCGTGAAGCAGAAGCGGCGAGGTGGAGGagtgagagaagagagagatacGGTGACGGAGGAGGAGGGAAGAGAAAGGTGATTAGCCCATGGCTAGCACCCACATTGGGTTACCCTCAAATGGCTCCACCACCCATTCACCATTTTAGACCCTTACATGTATGGGGTCATCCTCCCATGGACCACTCCTTCATCCCCATCTGGCCCAATCTTCCACATCCCCCATCACCGCCGCCTCCCTGGCCACCCGCCACAACCACTCCTCCACCACATCTACACCCTTCATTCTGGCACCACCcaaagGATCCCAATGCACTTACCCCAGCAACTGGAACACATTGTTTCCCACAACCTCTCACTGCCACTAGATTTGGATCTCCACCTATCCCTGCTGGCATCCCACCCCATGCCATGTTCAAGGTAGATTCCGGCGTCAGCCTCTCCACCGGCCGGCCCCCCCTCGACTTCCACCCGTCAAAGGAGAGTATTGATGCAGCTATTGAAGATGTTTTATCAAAACCATGGCTGCCACTTCCTCTTGGGCTCAAAGCTCCGGCTCTTGATTGTGTGTTGAGTGAATTACAGAGACAAGGAATTCCAAAAATTCCACCCTCTTCCGCTTGA 1251 0.4884 MLSASSLRISKDEFESQREMEGLGMDVGDHFAEFSEGNLLESFIDFDAFFVGDGDVLPELEMDPEILAEFSAGETMNSSLASLDNQNISDKATNKEEYENKVCSDSGSGSGSGISDSNSGGGGDGEEILKQASNNSKAKKSKASQGKRKVKKVDWTPELHRRFVQAVEQLGVDKAVPSKILEIMGIACLTRHNIASHLQKYRSHRKHLVAREAEAARWRSERRERYGDGGGGKRKVISPWLAPTLGYPQMAPPPIHHFRPLHVWGHPPMDHSFIPIWPNLPHPPSPPPPWPPATTTPPPHLHPSFWHHPKDPNALTPATGTHCFPQPLTATRFGSPPIPAGIPPHAMFKVDSGVSLSTGRPPLDFHPSKESIDAAIEDVLSKPWLPLPLGLKAPALDCVLSELQRQGIPKIPPSSA 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0677 416 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 415 - -
Sto12g0677 416 SUPERFAMILY Homeodomain-like 151 207 IPR009057 -
Sto12g0677 416 MobiDBLite consensus disorder prediction 93 152 - -
Sto12g0677 416 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 415 IPR044825 GO:0003700|GO:0045893
Sto12g0677 416 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 151 204 IPR006447 GO:0003677
Sto12g0677 416 Pfam Myb-like DNA-binding domain 153 202 IPR001005 -
Sto12g0677 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 147 206 IPR017930 -
Sto12g0677 416 Gene3D - 147 208 - -
Sto12g0677 416 MobiDBLite consensus disorder prediction 103 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0677 Sto-Chr12 4306181 4308432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0677 10 267 G2-like Transcription Factor Family AT5G44190 45.660 7.95e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto12g0677 Myb_DNA-binding 3.4e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0677 - - gmx:100775671 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0677 12 4306181 4308432 Sto12g0677 12 4306181 4308432 ECH