Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0667 ATGCGAAATCCAACAATGGCTGTGAAGGAAAGGCTAGGTCTCAAGCACAATAAGCCCAACAATGCTAAAGAGGTTCACTATAGGGGTGTCCGGAAGAGGCCTTGGGGTCGTTACGCCGCCGAAATACGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTGGGCACTTTCGACACGGCGGAGGAAGCCGCCAGAGCCTACGACGCCGCCGCCAGGCAATTCCGCGGCGCCAAGGCAAAGACCAATTTCCCTTTTCCCAACGAGGGCCTTCTCAACCAGAGCCCCAGCGAGACCAGCACCGTCGAGTCCTCAAGCCCAGATGGCTCCGAGCGTGAGATCACGCGCCGGTGCGACGTCGGTGTTGTCGTGGATCGCTTCCCGTTCCTCCCCATTCAGCCACACCACATGGCGTatggtggtggcggtggtgccGTTGCGGGTATGGTAGCTCCGGCGCGTCCGGTTTTCTTTTTTGAAGCGGCTGCGGGTAGGACCGAGTTCGTGGGCCAGCGTTTTCCTGTTCGGTTCCAGCCGGCGCCGGTCGAGGTTAAGCCCAAAATGGGTTGTGGGGCCCAGAGTGACTCGGATTCGTCGTCTGTCGTTGATTGTCAGCCTAAGAAAGCTATCAATCTTGATCTTAACCTTGCTCCTCCGATGGACGATTGA 663 0.5641 MRNPTMAVKERLGLKHNKPNNAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGAKAKTNFPFPNEGLLNQSPSETSTVESSSPDGSEREITRRCDVGVVVDRFPFLPIQPHHMAYGGGGGAVAGMVAPARPVFFFEAAAGRTEFVGQRFPVRFQPAPVEVKPKMGCGAQSDSDSSSVVDCQPKKAINLDLNLAPPMDD 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0667 220 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Sto12g0667 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 15 203 - -
Sto12g0667 220 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Sto12g0667 220 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Sto12g0667 220 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Sto12g0667 220 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Sto12g0667 220 MobiDBLite consensus disorder prediction 85 106 - -
Sto12g0667 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 203 - -
Sto12g0667 220 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Sto12g0667 220 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Sto12g0667 220 MobiDBLite consensus disorder prediction 85 112 - -
Sto12g0667 220 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0667 Sto-Chr12 4219122 4219784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0667 23 220 AP2-EREBP Transcription Factor Family AT5G44210 48.259 3.93e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto12g0667 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0667 K09286 - qsu:112001675 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0667 12 4219122 4219784 Sto7g0229 7 1637458 1639289 ECH
Sto12g0667 12 4219122 4219784 Sto4g2831 4 29105253 29106425 ECH
Sto12g0667 12 4219122 4219784 Sto12g0667 12 4219122 4219784 ECH
Sto12g0667 12 4219122 4219784 Sto13g2193 13 28820348 28823362 ECH