Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0664 ATGCGTGTTCTCCTTCATCTCTATGGAATTTTAGGGCAGATAATGAAGTCTTCAATGATTCAACTACACAAGGCCCTTGGTCTTTTGAGAATGGATAGTTTCCTACTTTCTGCTCCAACAACAGAAGCAGTGTCTTTGAAGAATGTGCTAATTACTAGTCAGAGCAGTTTTACCTTGTGGTGGCAGAAACCTTGGCCATATGACCACAAATTCCTTAATTCCCACCAACTCCTTTCCCCCACCAAATCCATGATCTCTGACTTTGACAACATCCCACCCAGGAAGCTCCTCACGCGCCGCGCCGCCGCCGCCGATGTCTACTGTGACTCGCCGCGCTTCTCTTCTTCCGACGAGATCCTTCTGCGCAAATTCCTTCCCCACAACGGCGATTCCGATGACGACGACGGCGGTGATTCCGACCCCTACACCTCCGATCACTTCCGCATGTACGAGTTCAAGGTTCGCCGGTGTACTCGCAGCCGGAGCCACGACTGGACTGACTGCCCCTTTGCTCATCCCGGCGAGAAGGCTCGCCGGCGGGATCCTAGACGGTACCACTACTCCGGCACTGTCTGCCCTGAGTACCGGCGCGGCGGCGGATGCAGCCGCGGCGACGCCTGCGAGTTTGCACACGGGGTGTTTGAATGTTGGCTTCACCCAGCTAGGTACAGAACAGAGGCTTGTAAGGATGGGAAAAATTGTAAGCGAAAGGTTTGCTTCTTCGCTCATACTTCTCGCCAATTGAGAATTCTTCCTGTGAATTCTCCCATTTCTTCGCCTGATCAAATCTCAAGCAAGAACAACAAATTCTCCAACAATTGCTGTTTGTGTTGTCATTGCTCTGCTTCTGCTAATTCTCCAACTTCTACTCTGTTTGGGATGTCTCATTTTTCACCGCCATTGTCGCCGTCGTCGTCCTCCGTCTCGCCTCCTCTTTCGCCGATCAAACGCCGGTCGTTGGCAAATGGGATGTCCCCAATTTCTCGATATAGTGATCGATTTGGGGGATCTGAGACTTACAATAATCATGGGGTGTCCATGAGCTGCAAGGATGTTCTGACTGAGCTGATGAGCTCCTTTCAGAGGCTGAATTTCAGTGaagcttcttcatcttcatcaccTGCCATTTCTGCCACCACCATTAATAAGCCTCTAAATCTGCCATGGCTTGACGTTTCTAATTTTCACTGTGATGATCAGTTTATTCTTTCACCGTCCGCTGCTTTCAATCCTGAAGATCAGCAGCAGTTTATTCTTTCACCATCTTCTCTGATTTCTCAGACCCCAACAACTTCATCTGCCTCTGCAAGTTTTTCCAATGGGAAAATTTCGAGCAGGAAAATCTTCAGCGACGAGAGCAAAATTTCCAATGATAATAATGGGTCTTCCTGTGCATTCCCAGATCTCGGTTGGGTCAATGACCTGTTGATGTAG 1434 0.4861 MRVLLHLYGILGQIMKSSMIQLHKALGLLRMDSFLLSAPTTEAVSLKNVLITSQSSFTLWWQKPWPYDHKFLNSHQLLSPTKSMISDFDNIPPRKLLTRRAAAADVYCDSPRFSSSDEILLRKFLPHNGDSDDDDGGDSDPYTSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGGCSRGDACEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTSRQLRILPVNSPISSPDQISSKNNKFSNNCCLCCHCSASANSPTSTLFGMSHFSPPLSPSSSSVSPPLSPIKRRSLANGMSPISRYSDRFGGSETYNNHGVSMSCKDVLTELMSSFQRLNFSEASSSSSPAISATTINKPLNLPWLDVSNFHCDDQFILSPSAAFNPEDQQQFILSPSSLISQTPTTSSASASFSNGKISSRKIFSDESKISNDNNGSSCAFPDLGWVNDLLM 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0664 477 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 109 476 - -
Sto12g0664 477 PANTHER UNKEMPT FAMILY MEMBER 109 476 IPR045234 -
Sto12g0664 477 SUPERFAMILY CCCH zinc finger 185 216 IPR036855 GO:0046872
Sto12g0664 477 SMART c3hfinal6 186 213 IPR000571 GO:0046872
Sto12g0664 477 SMART c3hfinal6 222 245 IPR000571 GO:0046872
Sto12g0664 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 191 212 IPR000571 GO:0046872
Sto12g0664 477 ProSiteProfiles Zinc finger C3H1-type profile. 187 214 IPR000571 GO:0046872
Sto12g0664 477 Gene3D - 181 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0664 Sto-Chr12 4192592 4196223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0664 142 310 C2H2 Transcription Factor Family AT5G12850 48.538 2.14e-50 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g0664 zf-CCCH 1.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0664 K23047 - jre:108986638 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0664 12 4192592 4196223 Sto12g0664 12 4192592 4196223 ECH