Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0653 ATGGTATGCCAGAGATTTAATATGGTTGCCAGTGAAAGATTGGAGTTCTTATCGTGTAAGAGAAGGGGACTAGGGTTTCTGTTGCAGATTGTGTTTCGGTGGTGGACTGTTTTACTATTTCTTCGTCCGGTGGCAGGTCTGAGACCGTTAAGGGAGAGAACTCGGTCGTGGGGCGATGAGTGGCTAGTcacaagaaaagaagaaagtgagCTAGGTCCATTTTCCCAATGGAACATATCAGGAACTTACAGAGGAACTTGGAAATTTTTAGATACCACTAATGGCTCTTCCAAATTTCCAGACATCAGAAAAGCAAATGGCAATTCTGTAATTGAATTAGTTAGTACACCCACAAAAATAACTGGGGTGCATTATGTTCAGGGGGTAGTTATATTCCACGATGTGTTTGACAACGAATACAATGTTGGCGGTGCTCAAGTCAGAGTAGAAGGTGTATATATATGGCCTTTTAGGCAGCTTCGACTGGTAGCCAACAGTGGAAAAGAGGGAGAGTTGAATCAGGGTGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTCTTCTCATCCCAAGTATTCCAAGAATCTTCACGAGATAAGATGTGGAGAAGAAAACATTCTCCGATATATGACATGGAGAAACATTGCAATATTGAAATTGCTGCACAGATTTCACGCATGTCATCATCGAAAAATGATGGGGATCATGACCTTTTCCACCTAGAAGGGCTAACAGAGAGTCCCTCAATGGATGATGATGGCTACTGCTTCTCACCTTTACTACTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACCTTTGTCTCTTTCTTGCAAGTTCTATTATTGATTCGGCAAATGGAGCATAGCAACACTCAGTCTGGAGCTGCCAAGGTTTCAATATTTATGATTGGCCAACAGGCGATCATGGATGCTTATCTTTGCCTTTTACATCTTACTGCAGGGATACTTgttgAGTCCCTGTTCAATGCTTTTGCAACTGCTGCTTTTTTCAAGTTCGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCCATATGGAAGGCAAGTAGGCCTTTCAACAATGGGGAAGGTTGGGAGACAATGAGACGGGAGCTTTCACTTTTATACAGTCGCTTCTATGGGATCCTGTTGGGAGGCATTCTCCTCATGTATGAGTTTCATAATTATTTGAGACCTATTGTTCTTCTTATGTACTCCTTTTGGATACCTCAGATTATCACTAATGTTGTTCGTGATTCGCGCAAACCATTGCATCCTCATTATATCCTAGGGATAACAGTCACTCGTCTAGCTatcccattatatattttcgGTTGCCCTAACAATTTCATGCGCATTGAACCACACAAGAACTGGTGTATTTGTCTGAGTGTATTTGTTGGACTTCAAGCTGCGGTTCTTGTACTTCAGCACTATCTTGGGTCCCGTTGGTTCATTCCTCGTCAGATTCTACCTGAGAAATACAGCTATTACAGGAGATTCGATCAAGACGCAAGTCATGCTTCAGACTGTGTTATTTGTATGACGGCCATTGATCTTACTCAGCAATCCAATGAATGCATGGTGACACCTTGCGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCGACTTGCCGGCGCCCACTGCCTCCTGCCTAG 1731 0.4125 MVCQRFNMVASERLEFLSCKRRGLGFLLQIVFRWWTVLLFLRPVAGLRPLRERTRSWGDEWLVTRKEESELGPFSQWNISGTYRGTWKFLDTTNGSSKFPDIRKANGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQVRVEGVYIWPFRQLRLVANSGKEGELNQGEDYILSNPYHLLGVFSSQVFQESSRDKMWRRKHSPIYDMEKHCNIEIAAQISRMSSSKNDGDHDLFHLEGLTESPSMDDDGYCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIFMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFNNGEGWETMRRELSLLYSRFYGILLGGILLMYEFHNYLRPIVLLMYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPHKNWCICLSVFVGLQAAVLVLQHYLGSRWFIPRQILPEKYSYYRRFDQDASHASDCVICMTAIDLTQQSNECMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0653 576 SUPERFAMILY RING/U-box 509 575 - -
Sto12g0653 576 SMART ring_2 526 569 IPR001841 -
Sto12g0653 576 Pfam Ring finger domain 525 570 IPR001841 -
Sto12g0653 576 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 12 576 - -
Sto12g0653 576 PANTHER RING ZINC FINGER PROTEIN 12 576 - -
Sto12g0653 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 576 IPR013083 -
Sto12g0653 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Sto12g0653 576 SMART ringv_2 525 570 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0653 Sto-Chr12 4143841 4151056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0653 517 574 C3H Transcription Factor Family AT1G53010 32.203 1.02e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0653 K23788 - gmx:100780140 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0653 12 4143841 4151056 Sto12g0653 12 4143841 4151056 ECH