Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0634 ATGGCCGTGGCCCAAACCGATTCCTTTGTAGAAGATAACAATGCTTCTTTGGAAAAGTGGAAATCTGCTCCTGATGCCATTGCAGATTCTGATAGTGATAGAAATGCCTCTGATGGCTTTGACTGCAACATCTGCCTGGACACTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATCATAGTATCTCCTCCAGTGAAGACAATAGACAGCAGAGTCCACAGTGTCCGGTATGCAAAACCCAAGTTTCACCATCTTCCTTGGTTCCACTCTATGGCCCTGGCCAAACCACAGGACCTTCCAAGGGCAAGTCCCACCAGTTAGGACCTGTCATACCAAAAAGACCACATGGACCTTTGTGGATGTTAGACTCGCAAGGAATATCTAATGCTGCTACAACGGTTTCCCAGCCGGCAACCCCATATCATCATCACAATTATCCGGAAACCCCATATCATTTCGGACAATCCAACTCAATTCCAGGCAGTTACACCTCACCTATGCTTACCATGGATGGTGCACTAGGAAATGCGTTTGATACGAGCATTCCCAAGGCCTTTTCAGAAAGTCCAGCTTTAATATCTGTGTTCTGCATAGCAGTTCAGAAGAGCACAGTAGACCTTGAAGACTCTGGAAGTTTCTGGAATACTGGAAAAATATCTCTCAGCTTCATCTAG 711 0.4599 MAVAQTDSFVEDNNASLEKWKSAPDAIADSDSDRNASDGFDCNICLDTVQDPVVTLCGHLYCWPCIYKWLNHSISSSEDNRQQSPQCPVCKTQVSPSSLVPLYGPGQTTGPSKGKSHQLGPVIPKRPHGPLWMLDSQGISNAATTVSQPATPYHHHNYPETPYHFGQSNSIPGSYTSPMLTMDGALGNAFDTSIPKAFSESPALISVFCIAVQKSTVDLEDSGSFWNTGKISLSFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0634 236 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Sto12g0634 236 ProSiteProfiles Zinc finger RING-type profile. 42 91 IPR001841 -
Sto12g0634 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 104 IPR013083 -
Sto12g0634 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 184 IPR045103 GO:0005783|GO:0006511|GO:0061630
Sto12g0634 236 SUPERFAMILY RING/U-box 33 97 - -
Sto12g0634 236 CDD RING-HC_AtRMA_like 40 91 - -
Sto12g0634 236 SMART ring_2 42 90 IPR001841 -
Sto12g0634 236 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 7 184 - -
Sto12g0634 236 Pfam Zinc finger, C3HC4 type (RING finger) 42 90 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0634 Sto-Chr12 3994410 3998333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0634 40 138 C3H Transcription Factor Family AT4G28270 51.923 1.99e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0634 K10666 - gmx:100785491 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0634 12 3994410 3998333 Sto12g0634 12 3994410 3998333 ECH