Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto12g0634 | ATGGCCGTGGCCCAAACCGATTCCTTTGTAGAAGATAACAATGCTTCTTTGGAAAAGTGGAAATCTGCTCCTGATGCCATTGCAGATTCTGATAGTGATAGAAATGCCTCTGATGGCTTTGACTGCAACATCTGCCTGGACACTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTCTACTGCTGGCCCTGCATTTACAAATGGCTTAATCATAGTATCTCCTCCAGTGAAGACAATAGACAGCAGAGTCCACAGTGTCCGGTATGCAAAACCCAAGTTTCACCATCTTCCTTGGTTCCACTCTATGGCCCTGGCCAAACCACAGGACCTTCCAAGGGCAAGTCCCACCAGTTAGGACCTGTCATACCAAAAAGACCACATGGACCTTTGTGGATGTTAGACTCGCAAGGAATATCTAATGCTGCTACAACGGTTTCCCAGCCGGCAACCCCATATCATCATCACAATTATCCGGAAACCCCATATCATTTCGGACAATCCAACTCAATTCCAGGCAGTTACACCTCACCTATGCTTACCATGGATGGTGCACTAGGAAATGCGTTTGATACGAGCATTCCCAAGGCCTTTTCAGAAAGTCCAGCTTTAATATCTGTGTTCTGCATAGCAGTTCAGAAGAGCACAGTAGACCTTGAAGACTCTGGAAGTTTCTGGAATACTGGAAAAATATCTCTCAGCTTCATCTAG | 711 | 0.4599 | MAVAQTDSFVEDNNASLEKWKSAPDAIADSDSDRNASDGFDCNICLDTVQDPVVTLCGHLYCWPCIYKWLNHSISSSEDNRQQSPQCPVCKTQVSPSSLVPLYGPGQTTGPSKGKSHQLGPVIPKRPHGPLWMLDSQGISNAATTVSQPATPYHHHNYPETPYHFGQSNSIPGSYTSPMLTMDGALGNAFDTSIPKAFSESPALISVFCIAVQKSTVDLEDSGSFWNTGKISLSFI | 236 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto12g0634 | 236 | ProSitePatterns | Zinc finger RING-type signature. | 57 | 66 | IPR017907 | - | |
Sto12g0634 | 236 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 91 | IPR001841 | - | |
Sto12g0634 | 236 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 104 | IPR013083 | - | |
Sto12g0634 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 7 | 184 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Sto12g0634 | 236 | SUPERFAMILY | RING/U-box | 33 | 97 | - | - | |
Sto12g0634 | 236 | CDD | RING-HC_AtRMA_like | 40 | 91 | - | - | |
Sto12g0634 | 236 | SMART | ring_2 | 42 | 90 | IPR001841 | - | |
Sto12g0634 | 236 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RMA1 | 7 | 184 | - | - | |
Sto12g0634 | 236 | Pfam | Zinc finger, C3HC4 type (RING finger) | 42 | 90 | IPR018957 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto12g0634 | Sto-Chr12 | 3994410 | 3998333 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto12g0634 | 40 | 138 | C3H Transcription Factor Family | AT4G28270 | 51.923 | 1.99e-31 | 112 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto12g0634 | K10666 | - | gmx:100785491 | 214.542 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto12g0634 | 12 | 3994410 | 3998333 | Sto12g0634 | 12 | 3994410 | 3998333 | ECH |