Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0627 ATGCAGCACCACCATAGCTCCGGCGTCATATTATTGAGCATTGTATTGATGAATGCTTTGGTGGTAAGCACGCAGGGGCAGCTTCCGCACAGGATTATAGACCCGCATTGGTACCCAGGAACCGCCACGTGGTACGGTAACCCAGAAGGAGACGGCAGTAGCGGTGGGGCGTGCGGGTACGGGTCGTTGGTAGACGTGAAGCCGTTGAAGGCCCGGGTGGGAGCGGTGGGTCCGGTGCTGTTCATGAAGGGGGAGGGGTGTGGTGCGTGCTATAAGGTTAAGTGTCTGGACAACACCATATGCTCCAAGCGAGCTGTCACCGTCATTATAACCGATGAGTGCCCTGGCTGCCCCTCTGACCGCACCCACTTCGACCTCAGTGGCGCCGCTTTTGGCCGCATGGCTCACAACGGCCAAAACTCTCAACTCAGGGACCGTGGTCAACTCCCAATCATCTACAGAAGGACAAAATGTAAATACCCTGGAAAAAACATTGCCTTCCATGTTAATGAAGGTTCCACACCTTTTTGGCTGTCACTTTTGGTAGAGTATGAGGATGGAGATGGGGATATTGCCTCTATGCATATACAAGAGGCGGGGTCCAGTGAATGGCTTGAGATGAATCATCTTTGGGGTGCAAATTGGAACATTATTGGAGGACCTTTGAGGGGACCATTCTCTGTGAAGCTAAGCACTTCCACTGGAAAAACTCTCTCTGCCAGAGATGTTATTCCAAGCAAATGGTCTCCAAAAGCTACTTACACCTCTCGCCTCAATTTTTTCCATTAG 789 0.5158 MQHHHSSGVILLSIVLMNALVVSTQGQLPHRIIDPHWYPGTATWYGNPEGDGSSGGACGYGSLVDVKPLKARVGAVGPVLFMKGEGCGACYKVKCLDNTICSKRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAHNGQNSQLRDRGQLPIIYRRTKCKYPGKNIAFHVNEGSTPFWLSLLVEYEDGDGDIASMHIQEAGSSEWLEMNHLWGANWNIIGGPLRGPFSVKLSTSTGKTLSARDVIPSKWSPKATYTSRLNFFH 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0627 262 SMART dpbb_1 73 153 IPR007112 -
Sto12g0627 262 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Sto12g0627 262 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Sto12g0627 262 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576
Sto12g0627 262 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Sto12g0627 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Sto12g0627 262 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Sto12g0627 262 Pfam Expansin C-terminal domain 165 245 IPR007117 -
Sto12g0627 262 Gene3D - 24 158 IPR036908 -
Sto12g0627 262 PANTHER EXPANSIN-B3 10 262 - -
Sto12g0627 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Sto12g0627 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 163 IPR007112 -
Sto12g0627 262 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Sto12g0627 262 PRINTS Major pollen allergen Lol pI signature 113 128 IPR005795 GO:0005576|GO:0019953
Sto12g0627 262 PRINTS Major pollen allergen Lol pI signature 135 150 IPR005795 GO:0005576|GO:0019953
Sto12g0627 262 PRINTS Major pollen allergen Lol pI signature 167 182 IPR005795 GO:0005576|GO:0019953
Sto12g0627 262 PRINTS Major pollen allergen Lol pI signature 183 198 IPR005795 GO:0005576|GO:0019953
Sto12g0627 262 PRINTS Major pollen allergen Lol pI signature 232 249 IPR005795 GO:0005576|GO:0019953
Sto12g0627 262 PANTHER EXPANSIN-LIKE PROTEIN B1 10 262 - -
Sto12g0627 262 Gene3D - 159 257 IPR036749 -
Sto12g0627 262 Pfam Lytic transglycolase 78 137 IPR009009 -
Sto12g0627 262 SUPERFAMILY Barwin-like endoglucanases 32 162 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0627 Sto-Chr12 3973594 3976156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0627 9 198 Expansin Gene Family AT2G20750 64.824 3.15e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0627 K20628 - gmx:100780112 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0627 12 3973594 3976156 Sto12g0627 12 3973594 3976156 ECH