Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0622 ATGGAGAGAGCGAGAGGGAAGTCATTGTCGGGCATGGCAGGAAGCTCTAATGCCACTGACACTCATCATATGGAACAAAACCCAGCTTTTGATGGCATCAACCAACTCTCATCTCAGTCCCCTGTTCCACACACtctgtcttcttcttcatcaatcACGTTTCCCTTCTCTCTTGATGGGTTTCCCCACCAATCTGGAACCACCAATCTGCCTGTGTTTCATCCAAGTCTAACAGATGATGAGCACAAGAGTAGTCCTCGCCCATTGCATACAACAAGGCTGTACAGGGGAGTGAGGCAACGCCATTGGGGCAAATGGGTGGCCGAGATTCGTCTTCCTCGCAATAGGACTCGCCTCTGGTTAGGCACCTTTGACACTGCGGAAGATGCCGCTCTCGCTTACGATCGCGAGGCCTTTAAGCTCAGAGGACACAATGCTAGGCTCAATTTCCCCCACCTCTTTCTCAATAAACCTCCCATTTCAGCTTCAGAAGCAGAACAACCTCAACCCCCACAACAAAACGTCGACCAAGTGAAGCAAACTAGTAATGAAACGGAGGAACATTTGTGGGGGGAAGTAGCGGCTTGGTTCGATTCCATTCCAGAAAATTGGGGAGCTGAGAGCCCTGTGTGGGAGTGGGATGATTTGGATACTACCAATAATCTTGTGTTTCAATCACAGCTTGCTTTTGTGAATCCCAATCAGCAAGAGTTTGATGATGATCTTGCTCTGCGCCACAATTAG 744 0.4785 MERARGKSLSGMAGSSNATDTHHMEQNPAFDGINQLSSQSPVPHTLSSSSSITFPFSLDGFPHQSGTTNLPVFHPSLTDDEHKSSPRPLHTTRLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGHNARLNFPHLFLNKPPISASEAEQPQPPQQNVDQVKQTSNETEEHLWGEVAAWFDSIPENWGAESPVWEWDDLDTTNNLVFQSQLAFVNPNQQEFDDDLALRHN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0622 247 MobiDBLite consensus disorder prediction 67 90 - -
Sto12g0622 247 Pfam AP2 domain 95 144 IPR001471 GO:0003700|GO:0006355
Sto12g0622 247 SUPERFAMILY DNA-binding domain 94 152 IPR016177 GO:0003677
Sto12g0622 247 SMART rav1_2 94 157 IPR001471 GO:0003700|GO:0006355
Sto12g0622 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 166 238 - -
Sto12g0622 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 86 184 - -
Sto12g0622 247 ProSiteProfiles AP2/ERF domain profile. 94 151 IPR001471 GO:0003700|GO:0006355
Sto12g0622 247 MobiDBLite consensus disorder prediction 162 180 - -
Sto12g0622 247 Gene3D AP2/ERF domain 94 152 IPR036955 GO:0003700|GO:0006355
Sto12g0622 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 166 238 - -
Sto12g0622 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 86 184 - -
Sto12g0622 247 MobiDBLite consensus disorder prediction 1 46 - -
Sto12g0622 247 MobiDBLite consensus disorder prediction 161 184 - -
Sto12g0622 247 PRINTS Ethylene responsive element binding protein signature 95 106 IPR001471 GO:0003700|GO:0006355
Sto12g0622 247 PRINTS Ethylene responsive element binding protein signature 117 133 IPR001471 GO:0003700|GO:0006355
Sto12g0622 247 MobiDBLite consensus disorder prediction 10 46 - -
Sto12g0622 247 CDD AP2 95 153 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0622 Sto-Chr12 3955758 3956644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0622 87 221 AP2-EREBP Transcription Factor Family AT2G20880 53.086 2.38e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto12g0622 AP2 9.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0622 - - adu:107477889 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0622 12 3955758 3956644 Sto12g0622 12 3955758 3956644 ECH