Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0619 atggaagaggaagaggaagaggcaCTCATACTACAAGGCCAAGCTGATATGTGGAAGTACATGTTAAGCTTCGCAGATTCCATGGCCTTAAAATCCACTGTGGAGTTGGGGATACCCGACATTATACACCGCCACGGTGGACCAATCACCTTATCCCAACTTGCTGCTGCTCTCTCCGATGCACCCTCTCCAGACATCAGCTGCCTGGCACGTGTGATGCGACTCCTTGTCCACCGCAAGATCTTCACGGCATCCGAGGGCGGAGAAGGAGACACGCTGTACGGCCTGACCCACTCCTCGAGATGGCTGCTACGTGGCAGCGAGACAAGCCTAGCGGCGATGGTTGAGATGGAGACGCATCCGTGGCTAGTGGCGCCGTGGAACTATCTGAGCCAATGTGTGAGAGAAGGTGGGATGGCATTCAAGAAGGCTCATGGGCGTGAGATCTGGGAGTTTGCATCGGAGAACCCagaattcaacaagaagttcaATGAGGGGATGGAGTGTACGGCCAGGATTGCGATGAAGGCCATCGTTGCAGGATATAAGAATGGATGCATCAACTTTGATCTTCCGCATGTGGTTGCCACCGCACCTGATTACCACAGAGTCACCCATGTCGGAGGAGACATGTTTCATTCTATTCCTCATGCTGATGCTGTTTTCATGAAGTGgatactacatgattggaaCGACGAAGAGTGCATAAAGATATTGAAGAATTGCAAAAAAGCAATAGGAGATGGGAAGAGAGGGAAGGTGATTATAGTTGACTCTGTTCGAAAACAGAGGGGAAGGGAGTGTGGAAAGGAGAGGACTGAGTTGGAATGGAATAACCTATTGCGACAAGATGGCTTTCCTCGCTATAACATCATCAACATCCCAGCTTTGGTTTCCATCATTGAAGCTTATCCACTttga 921 0.4701 MEEEEEEALILQGQADMWKYMLSFADSMALKSTVELGIPDIIHRHGGPITLSQLAAALSDAPSPDISCLARVMRLLVHRKIFTASEGGEGDTLYGLTHSSRWLLRGSETSLAAMVEMETHPWLVAPWNYLSQCVREGGMAFKKAHGREIWEFASENPEFNKKFNEGMECTARIAMKAIVAGYKNGCINFDLPHVVATAPDYHRVTHVGGDMFHSIPHADAVFMKWILHDWNDEECIKILKNCKKAIGDGKRGKVIIVDSVRKQRGRECGKERTELEWNNLLRQDGFPRYNIINIPALVSIIEAYPL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0619 306 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 18 306 IPR016461 GO:0008168
Sto12g0619 306 PIRSF O-mtase 185 306 IPR016461 GO:0008168
Sto12g0619 306 PIRSF O-mtase 1 184 IPR016461 GO:0008168
Sto12g0619 306 Pfam Dimerisation domain 28 77 IPR012967 GO:0046983
Sto12g0619 306 Gene3D Vaccinia Virus protein VP39 106 182 IPR029063 -
Sto12g0619 306 Gene3D - 1 103 IPR036388 -
Sto12g0619 306 SUPERFAMILY "Winged helix" DNA-binding domain 7 107 IPR036390 -
Sto12g0619 306 Pfam O-methyltransferase domain 176 283 IPR001077 GO:0008171
Sto12g0619 306 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 186 305 - -
Sto12g0619 306 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 5 185 - -
Sto12g0619 306 PANTHER O-METHYLTRANSFERASE 5 185 IPR016461 GO:0008168
Sto12g0619 306 PANTHER O-METHYLTRANSFERASE 186 305 IPR016461 GO:0008168
Sto12g0619 306 Gene3D Vaccinia Virus protein VP39 183 305 IPR029063 -
Sto12g0619 306 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 304 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0619 Sto-Chr12 3932062 3933825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0619 28 302 Monolignol Biosynthesis Gene Families AT5G54160 33.333 7.93e-54 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0619 K22588 - zju:107416580 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0619 12 3932062 3933825 Sto12g0619 12 3932062 3933825 ECH