Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0586 ATGGGAAGAGCACCTTGCTGCGACAAAAATGGACTGAAGAAAGGTCCCTGGACTCCTGAAGAAGACACCAAGCTCATCCAATATATTCAAGCTCATGGTGCAGCCAATTGGCGAACCCTCCCCAAAAATGCTGgtCTTGAAAGATGTGGCAAGAGTTGCCGGCTTCGATGGACTAATTACCTGAGACCCGACATCAAGAGAGGAAGATTCTCCTTCGAAGAAGAAGAGATCATTATTCAGTTGCACAGTATGTTGGGAAACAAATGGTCGGCCATAGCATCTCGATTACCAGGAAGAACCGACAATGAAATCAAGAACTACTGGAACACCCACATCAGAAAGAGGCTTCTTCGAATGGGAATTGACCCTGTCACTCACACCCCTCGTCTCGATCTTCTCGACCTATCCTCCATTCTAACGTCGGTTTTGGGCGACCCCTCCTCGCTTCTCAACCTTCAAGCTGCCTTCACCATCAACCCACAATTGGTCCTACAACAAATCCAACCTCCCAATCATCCCCCTCAATTTCAACCACAAACAAGTCATCAGTTTCAGATGCCAATTGAAACCCCCACAAATATTGGATTGTCCCATGATTCCCAACAAAATTCAGTTCCATCCTATATGGCTGAGCTTGAGAAGCTTCTGTTGGAACAAAACCAAGTGGATTATTGTTCAGGAGAGGCAAGTTTGAACAACGCAAGGCAGAACAGGGGATATGGATATGACTCTGTTTTATCTACGCCTTCATCCAATACAACCCCATTGAACTCATCATCCACGACGTCGTTTGTGAATAGCGAGGAGGAGAGAGATAGCTATTGCAGCGACTTGTTCAACTTCCAAATTCCACAAACTCTGGATATTACTGACTTTTTTTGTAAATATGTTTtggattcttaa 903 0.4441 MGRAPCCDKNGLKKGPWTPEEDTKLIQYIQAHGAANWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEEIIIQLHSMLGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLSSILTSVLGDPSSLLNLQAAFTINPQLVLQQIQPPNHPPQFQPQTSHQFQMPIETPTNIGLSHDSQQNSVPSYMAELEKLLLEQNQVDYCSGEASLNNARQNRGYGYDSVLSTPSSNTTPLNSSSTTSFVNSEEERDSYCSDLFNFQIPQTLDITDFFCKYVLDS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0586 300 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto12g0586 300 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sto12g0586 300 CDD SANT 69 112 IPR001005 -
Sto12g0586 300 PANTHER TRANSCRIPTION FACTOR MYB41 1 288 - -
Sto12g0586 300 CDD SANT 16 61 IPR001005 -
Sto12g0586 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto12g0586 300 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto12g0586 300 Gene3D - 69 116 - -
Sto12g0586 300 Gene3D - 13 66 - -
Sto12g0586 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto12g0586 300 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto12g0586 300 MobiDBLite consensus disorder prediction 242 265 - -
Sto12g0586 300 SMART sant 13 63 IPR001005 -
Sto12g0586 300 SMART sant 66 114 IPR001005 -
Sto12g0586 300 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto12g0586 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0586 Sto-Chr12 3735594 3736650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0586 1 292 MYB Transcription Factor Family AT4G21440 46.439 1.35e-95 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0586 Myb_DNA-binding 9.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0586 K09422 - gmx:102668351 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0586 12 3735594 3736650 Sto12g0586 12 3735594 3736650 ECH