Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0574 ATGGGAAGAGCACCTTGCTGCGACAAAAATGGACTGAAGAAAGGTCCCTGGACTCCTGAAGAAGACACCAAGCTCATCCAATATATTCAAGCTCATGGTGCAGCCAATTGGCGAACCCTCCCCAAAAATGCTGgtCTTGAAAGATGTGGCAAGAGTTGCCGGCTTCGATGGACTAATTACCTGAGACCCGACATCAAGAGAGGAAGATTCTCCTTCGAAGAAGAAGAGATCATTATTCAGTTGCACAGTATGTTGGGAAACAAATGGTCGGCCATAGCATCTCGATTACCAGGAAGAACCGACAATGAAATCAAGAACTACTGGAACACCCACATCAGAAAGAGGCTTCTTCGAATGGGAATTGACCCTGTCACTCACACCCCTCGTCTCGATCTTCTCGACCTATCCTCCATTCTAACGTCGGTTTTGGGCGACCCTCCTCGCTTCTCAACCTTCAAGCTGCCTTCACCATCAACCCACAATTGGTCCTACAACAAATCCAACCTCCCAATCATCCCCCTCAATTTCAACCACAAACAAGTCATCAGTTTCAGATGCCAATTGAAACCCCCACAAATATTGGATTGTCCCATGATTCCCAACAAAATTCAGTTCCATCCTATATGGCTGAGCTTGAGAAGCTTCTGTTGGAACAAAACCAAGTGGATTATTGTTCAGGAGAGGCAAGTTTGA 693 0.4603 MGRAPCCDKNGLKKGPWTPEEDTKLIQYIQAHGAANWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEEIIIQLHSMLGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLSSILTSVLGDPPRFSTFKLPSPSTHNWSYNKSNLPIIPLNFNHKQVISFRCQLKPPQILDCPMIPNKIQFHPIWLSLRSFCWNKTKWIIVQERQV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0574 230 CDD SANT 69 112 IPR001005 -
Sto12g0574 230 CDD SANT 16 61 IPR001005 -
Sto12g0574 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto12g0574 230 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sto12g0574 230 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto12g0574 230 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto12g0574 230 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 137 - -
Sto12g0574 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto12g0574 230 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto12g0574 230 SMART sant 13 63 IPR001005 -
Sto12g0574 230 SMART sant 66 114 IPR001005 -
Sto12g0574 230 Gene3D - 13 66 - -
Sto12g0574 230 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto12g0574 230 Gene3D - 69 116 - -
Sto12g0574 230 PANTHER TRANSCRIPTION FACTOR MYB41 1 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0574 Sto-Chr12 3689940 3690785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0574 1 143 MYB Transcription Factor Family AT4G21440 86.014 2.92e-92 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0574 Myb_DNA-binding 6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0574 K09422 - sind:105162661 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0607 7 4468237 4469381 Sto12g0574 12 3689940 3690785 CCT
Sto12g0574 12 3689940 3690785 Sto12g0574 12 3689940 3690785 ECH