Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0566 ATGGTGAGAGGTGGTTACTATGACAAAAGTGGAGTGAGGAGAGGTGCGTGGAGTAAGGATGAGGATCATAAGTTAAGAGCTTATATTCAGACATACGGTCATTCCAATTGGCGTCAACTCCCCAAATTTGCAGGTTTATCAAGGTGTGGAAAAAGCTGCAGACTTCGATGGTCCCTGATTGCTGGAAAATTAGCAGGAAGAAGTGACAACGAGGTAAAGAACCATTGGCATAGCCACCTAAAGAAGCAATTAATAAAGTGCAATCATGATGAGATGATGACATCTGAGTTCAAATTAACGAAGCAGCTTAAGGATGCTAATTATGAAGTAGGAGAAACAACTGAGTATGCAGAATCTGAAAAAGTAATCCTTGGAAGTACCCAATTAGCTGCCTcctacaataataatattttacaaaGCTCACAAGAATATTGTAGTGATGTTCATATGGCTGCATGGGAAATAAGTGAAGAATTCAGCAATTCTTGGACCCACCCATTTAtccaacaaaataattatacatataGTCACCAAAATGACTACCTCGGTCCCAACTACTACGCAACAAATGTTGAAGACACACTCACGGACCAATATCTTTCATACTTGTTTGACAATAATAGAGAGTTTTTGTGCCAAGTGATGCAAGAATTTCCAACTTAA 663 0.3741 MVRGGYYDKSGVRRGAWSKDEDHKLRAYIQTYGHSNWRQLPKFAGLSRCGKSCRLRWSLIAGKLAGRSDNEVKNHWHSHLKKQLIKCNHDEMMTSEFKLTKQLKDANYEVGETTEYAESEKVILGSTQLAASYNNNILQSSQEYCSDVHMAAWEISEEFSNSWTHPFIQQNNYTYSHQNDYLGPNYYATNVEDTLTDQYLSYLFDNNREFLCQVMQEFPT 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0566 220 Pfam Myb-like DNA-binding domain 14 57 IPR001005 -
Sto12g0566 220 Gene3D - 58 86 - -
Sto12g0566 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sto12g0566 220 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto12g0566 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 84 IPR017930 -
Sto12g0566 220 SMART sant 13 82 IPR001005 -
Sto12g0566 220 Gene3D - 14 57 - -
Sto12g0566 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 56 180 - -
Sto12g0566 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 57 - -
Sto12g0566 220 SUPERFAMILY Homeodomain-like 14 81 IPR009057 -
Sto12g0566 220 CDD SANT 16 80 IPR001005 -
Sto12g0566 220 PANTHER MYB-RELATED PROTEIN MYB4 56 180 - -
Sto12g0566 220 PANTHER MYB-RELATED PROTEIN MYB4 6 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0566 Sto-Chr12 3662085 3663484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0566 1 92 MYB Transcription Factor Family AT5G10280 44.355 1.58e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto12g0566 Myb_DNA-binding 2.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0566 K09422 - cit:102630815 149.443