Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0562 ATGAGGATGGTGGCGAGCAGTGAGAAGATCAAGAAAGGCACATGGACACCCGAGGAGGACCGCAAGTTAATTGCTTATGTTACTAGGTATGGCTGCTGGAACTGGCGTCAGCTGCCCAGGTGCGGAAAGAGTTGCAGACTGAGATGGCTCAATTATCTGAGGCCAGACATCAGAAGAGGAAACTATACTCCCGAAGAAGATGAACTCATCATAAAATTCCACCAACAGCTAGGTAACAGATGGTCCGCCATAGCGGCTAAGCTACCGGGAAGAACCGACAATGAAATAAAGAACCACTGGCACACCCACCTCAAGAATAAGCGCCCAATTATTCAAGTTGATGATGAGGAATACAAATCCTCATCAGACTCGGCGTCTACTCATCACTCCTCGTCCCACATCCACATAAGGGGTAGCCGTGATCAGATCAGTAGTGAGACTAATATTGATTATAATAACCACACATTATTGGATTTGGATACTAAGCACCATGAGTTTGGTTTTGTGGAGGCAATGAGCGAAAGCTTGTGGACACACCCATATCTACATGTGCCTCATTCTGAATCCCACTGCACCTTCACTCCATTCTCCAATATTAATCCCCAACTTTGGACTCATAATCATTTCTAA 630 0.4556 MRMVASSEKIKKGTWTPEEDRKLIAYVTRYGCWNWRQLPRCGKSCRLRWLNYLRPDIRRGNYTPEEDELIIKFHQQLGNRWSAIAAKLPGRTDNEIKNHWHTHLKNKRPIIQVDDEEYKSSSDSASTHHSSSHIHIRGSRDQISSETNIDYNNHTLLDLDTKHHEFGFVEAMSESLWTHPYLHVPHSESHCTFTPFSNINPQLWTHNHF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0562 209 CDD SANT 14 53 IPR001005 -
Sto12g0562 209 SUPERFAMILY Homeodomain-like 10 100 IPR009057 -
Sto12g0562 209 CDD SANT 61 104 IPR001005 -
Sto12g0562 209 ProSiteProfiles Myb-like domain profile. 7 53 IPR001005 -
Sto12g0562 209 Gene3D - 3 58 - -
Sto12g0562 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 53 IPR017930 -
Sto12g0562 209 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 8 151 - -
Sto12g0562 209 SMART sant 11 55 IPR001005 -
Sto12g0562 209 SMART sant 58 106 IPR001005 -
Sto12g0562 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Sto12g0562 209 Gene3D - 61 107 - -
Sto12g0562 209 MobiDBLite consensus disorder prediction 118 139 - -
Sto12g0562 209 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Sto12g0562 209 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 8 151 - -
Sto12g0562 209 Pfam Myb-like DNA-binding domain 12 53 IPR001005 -
Sto12g0562 209 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0562 Sto-Chr12 3632228 3633048 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0562 10 107 MYB Transcription Factor Family AT2G31180 69.231 7.99e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0562 Myb_DNA-binding 3.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0562 K09422 - rcu:8287581 190.274