Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0557 atgaagaagtgCGAACTGTGCAAGATTCCGGCGAGAACCTACTGCGAATCGGACGAGGCGAGCTTGTGCTGGGAGTGCGATGCCAAGGTTCACGGAGCTAACTTCTTGGTAGCCAGGCACTCCAGGACTCTTCTATGTCATGCTTGCCAGTCTCCCACGCCCTGGAAAGCCTCCGGCGTCCACCTCGGAAACACTGTTTCCCTGTGCCGCGCTTGTGACGACCAAGAAGAAGGCGAGGAGAGCGAAGGAGGCAATGACACAGACTCCGATGGCGCTGACGACGGAGATAGCCAAATAGTTCCGTCGTCCTCCACCACGACGCCGCCACCGCCGTCGAGTTCTTCAAGCAGCGACGAGTCAGTTTCAGAATCGGTAACAACAGTTTCCTTGAAACGACGACGTGCGGATGCGGATGCAGGGGATCATAATTCTCagGATGGTGCGAGTGCAACAGATGGGGGATGA 465 0.5548 MKKCELCKIPARTYCESDEASLCWECDAKVHGANFLVARHSRTLLCHACQSPTPWKASGVHLGNTVSLCRACDDQEEGEESEGGNDTDSDGADDGDSQIVPSSSTTTPPPPSSSSSSDESVSESVTTVSLKRRRADADAGDHNSQDGASATDGG 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0557 154 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Sto12g0557 154 MobiDBLite consensus disorder prediction 75 93 - -
Sto12g0557 154 PANTHER - 1 146 - -
Sto12g0557 154 MobiDBLite consensus disorder prediction 96 128 - -
Sto12g0557 154 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Sto12g0557 154 SMART bboxneu5 1 45 IPR000315 GO:0008270
Sto12g0557 154 MobiDBLite consensus disorder prediction 72 154 - -
Sto12g0557 154 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 146 - -
Sto12g0557 154 CDD Bbox1_BBX-like 3 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0557 Sto-Chr12 3600655 3601233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0557 2 138 C2C2-CO-like Transcription Factor Family AT5G54470 45.963 1.88e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto12g0557 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0557 - - lang:109338335 146.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0623 7 4599794 4601507 Sto12g0557 12 3600655 3601233 CCT
Sto12g0557 12 3600655 3601233 Sto12g0557 12 3600655 3601233 ECH