Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0544 ATGGTGAGAACTCGTAATTTTCCTTCCATTGACAAAAATGATCTGAAGAAAGGTCATTGGACACAAGAGGAAGACAAAAAGTTAATTGCTTATGTTACTAGGTATGGCTGCTGGAACTGGCGCCAACTTCCCAGGTTTGCAGgACTGGCAAGGTGTGGAAGGAGTTGCAGATTGAGATGGTTAAACTATTTAAGGCCCAACATCAAAAGGGGAAAATACACTCAAGATGAAGATAACACTATCATCTCACTCCATCAAATGCTCGGTAATAGATGGTCAGCCATAGCAGCTCAATTGCCAGGAAGAACAGATAACGGAATAAAGAATCACTGGCATACCACCCTTAAGAAGCGCTCACAAACTAAAAACCATGAATTCTGCAAATCAAAGGATATTGATGACGAAAACCCTCTTGAATCTACTCACCCAATTACTCCTGATCAGATGGCCCAAATACCCCCATTGTCTCCTCAATCATGCTCCACTGAAATCACCGTACCACCTACCTTTAACGATAATCTGTTTCAACAACACCATGATGATTCTGCTTTTCTGGATGCATACTCCACCCAAAACTTCTGGACACAGCCATTTATGGACccatttgaaaatataattattaatgataCTGAATCAGATTTGACGCCATTGTCTGCCCACACATGTTGGAGTGAAAGTTTGGAATTGGCTGTGGACGACCACTTGGCTACTTTTAGGGATGTACAAACTCACCCAATcatgtttgaaaatttttggacacagtcatatatatatggttCACATGTCCCATTCTCCAACTGA 801 0.3895 MVRTRNFPSIDKNDLKKGHWTQEEDKKLIAYVTRYGCWNWRQLPRFAGLARCGRSCRLRWLNYLRPNIKRGKYTQDEDNTIISLHQMLGNRWSAIAAQLPGRTDNGIKNHWHTTLKKRSQTKNHEFCKSKDIDDENPLESTHPITPDQMAQIPPLSPQSCSTEITVPPTFNDNLFQQHHDDSAFLDAYSTQNFWTQPFMDPFENIIINDTESDLTPLSAHTCWSESLELAVDDHLATFRDVQTHPIMFENFWTQSYIYGSHVPFSN 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0544 266 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Sto12g0544 266 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Sto12g0544 266 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Sto12g0544 266 Gene3D - 72 139 - -
Sto12g0544 266 SMART sant 69 117 IPR001005 -
Sto12g0544 266 SMART sant 16 66 IPR001005 -
Sto12g0544 266 CDD SANT 72 115 IPR001005 -
Sto12g0544 266 Gene3D - 9 70 - -
Sto12g0544 266 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Sto12g0544 266 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Sto12g0544 266 CDD SANT 20 64 IPR001005 -
Sto12g0544 266 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 208 - -
Sto12g0544 266 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 208 - -
Sto12g0544 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Sto12g0544 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0544 Sto-Chr12 3528393 3530180 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0544 8 195 MYB Transcription Factor Family AT2G31180 48.947 4.62e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0544 Myb_DNA-binding 1.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0544 K09422 - gmx:778087 234.572