Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0543 ATGGTGAGAATTCTTCCTTCCTATGACAAAAATGGACTGAAGAAAGGACACTGGACACCAGAGGAAGACAGGAAGTTAATTGCATATGTTACTAGGTATGGCTGCTGGAATTGGCGTCAGCTTCCCAGGTttgcagGATTGGCAAGGTGTGGAAAGAGTTGCAGGTTGAGATGGTTGAACTATTTAAGGCCCAATATCAAAAGAGGAAACTACACTGAAGATGAAGAAAACGCTATCATCGCTCTCCATCAAAAGCTCGCTCAATTACCAGGTAGAACAGATCACGAAATAAAGAATCACTGGCACACCATCCTTAAGAAGCGCTTAAAGAACAAGTCAGACGTCGCAATGACAAATAACAAAGCTGAATCCTCAAATTCAAAGGATCCCATAATTGACAACCCTGCTCTTGAATCAATTTCTAGTGAAGATGATCATGATCATATCAAACCTCTGATCCCCCTCACAGGCCCTAGCTTGTCCCCTCAGCCTCAGCCCACTGAAAATAATATGTTTGAGCAAGATGACTTTGCTTTTCTTGATGCATACTCAACCGGAAACTTCTGGACTGAGCCATTTATGGCTAATGATTCTGGCGTCTCAATTGAGAATAATATGGTgtcaaacaataataataataatgatgcaTCTTATGAATCTCATCAAACTAGTGATAGCCAGATTCAAGATGTGCCTGCCCAGACAGGTTGGGGGGAAAATTTGGGTGTGGAAGAGCAGTTGAGTACTACTTCTGGCCCTGGGGAGTCTGAAAATCTTTGGACAGACCCATATTTGGTGGACATGTCCCATATTGCTTCAGCTCAAACAGTACCCTTTGAGACAGATTCAGAATTTTTTAGTCCCAATATTTATGATGCACATTATCTTTGGGATTAA 897 0.4058 MVRILPSYDKNGLKKGHWTPEEDRKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTEDEENAIIALHQKLAQLPGRTDHEIKNHWHTILKKRLKNKSDVAMTNNKAESSNSKDPIIDNPALESISSEDDHDHIKPLIPLTGPSLSPQPQPTENNMFEQDDFAFLDAYSTGNFWTEPFMANDSGVSIENNMVSNNNNNNDASYESHQTSDSQIQDVPAQTGWGENLGVEEQLSTTSGPGESENLWTDPYLVDMSHIASAQTVPFETDSEFFSPNIYDAHYLWD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0543 298 CDD SANT 18 62 IPR001005 -
Sto12g0543 298 SUPERFAMILY Homeodomain-like 12 101 IPR009057 -
Sto12g0543 298 MobiDBLite consensus disorder prediction 112 165 - -
Sto12g0543 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Sto12g0543 298 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Sto12g0543 298 Gene3D - 14 67 - -
Sto12g0543 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 109 IPR017930 -
Sto12g0543 298 CDD SANT 70 105 IPR001005 -
Sto12g0543 298 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Sto12g0543 298 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 277 - -
Sto12g0543 298 Gene3D - 70 131 - -
Sto12g0543 298 MobiDBLite consensus disorder prediction 115 132 - -
Sto12g0543 298 SMART sant 67 107 IPR001005 -
Sto12g0543 298 SMART sant 14 64 IPR001005 -
Sto12g0543 298 PANTHER MYB-RELATED TRANSCRIPTION FACTOR 1 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0543 Sto-Chr12 3519123 3520691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0543 6 141 MYB Transcription Factor Family AT2G31180 53.333 6.81e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto12g0543 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0543 K09422 - gmx:100777107 248.054