Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0542 ATGAAAAGTGAGTTAAAGGGAAGCACGGCTACTTCCATCTCCATCCAATACCCTTCTCTGTTGAACGCACCACCCCACACTACTACTTCTCCTGATCTTTCGGGAGCACTCAAAGGCTGTCTTGGAAGCCTGGATGGAGCTTGTATAGAGAAGCTGCTTCTCCATTGTGCAAGTGCTTTAGAGAGCAACGACGTCACTTTAGCCCAACAAGTTATGTGGGTGCTCAATAATGTGGCTTCTCCTCTTGGCGACACCAACCAGAGGCTCACCTCTTGCTTCCTCAGGGCTTTGGTCTCTAGGGCATCACGTGTTTGCCCTGTGCCTATGTCCTTCAATGGAAGAACCACTTGTATCCAGAGAAGGTTGATGTCTGTGACAGAGCTAGCAGGGTACGTTGATCTCATCCCTTGGCATAGCTTTGGTTTTTCTGCTTCCAATAGTGCTATTTTCAAGGCAATTCATGGCTTCCCAAGAGTCCACATACTTGATTTTAGCATCACTCACTGTATGCAATGGCCTACACTTATAGATGCCTTGGCCAAAAGGCCTCAGGGCCCTCCTCACCTTAAGATCACCCTGCCCTCCACTAGGCCACCTGTCCCTCCTTTGGTCAATATTTCTACTCAAGAAGTTGGGCTGCGTTTGGCCAATTTTGCTAAGTTCAGGAATGTCGTTTTTGAATTCAATGTGATTGGGCAGCATAGCACGTCTTCTGAATTAATTAGCAATGTtaataataatgagtattaTTCATCTAGCTTTCAGTTTGAGTCACTGTTAAGTCAATTGAATGCTGCTACGTTAAATCTTAGGGAAGATGAGGCTTTGGTGATCAATTGCCAAAATTGGCTTCGTTACTTGTCTGATGAAAGAAAGGGGAGTTTCCAAAATAGTGCTTCTGCTAGGGATAGTTTTATAAATCTTATTAAGAGTCTTAACCCAAGAATAGTACTTTTGGTTGATGAGGATTGTGATCTTAGTGCACCAAGTCTCACATCAAGAATCACCACTTGTTTCAACTATTTATGGATACCCTTCGATGCCTTGGAAACTTTTTTGCCTAAAGATAGTAGGCAGAGGGTGGAGTATGAATGTGATATAGGTCAGAAAATTGAGAACAGCATTAGCTTTGAGGGAGTTGAGAGAATAGAGAGATTGGAGAGCGGGGTAAAAATGTCACAGAGGATGAAAAATGGGGGCTTCTTCAGTGTTCCATTTTGTGATGAAACTGTGAGGGAAGTGAAGGGGTTGCTGGATGAGCATGCTAGTGGATGGGGgatgaagagagaagaagataTGTTAGTTCTCACATGGAAAGGACATAACTCTGTCTTTGCCACGGCTTGGGTCCCCAACGAAACAACGGACGACCATATGGTGGTCCCAGGGAGAAGCAGACCAGACAGAAGAAAACAACCAGTGTTTCATCGATTTGTGAAAAGGCTGCAAGAGATGGATCGATCcaagagggaaaaagaaaagcgGCTTCATTTTGAGATTATGGAACTTAACTGTAATCTGGAAGTGGATATAAATGGAGAGGAGACCTTCATTGTGGACAAGAACATTGTTGGTCAATATTCGggaaaattcatcaaattatttgGAAAAAATAATGGTGTTTCCAGGAAGCTTAAAGTAATATTCCATGACTTTCCAGGAGGGGCATCAGGCTTTGAGCTTATATTAAGATTTGTTTATAACAATGGAAAATCTAACATAACTCCTTCCAATTTGTTACTGGCACACTCTGCTGCAAAATTCATGGAAATGAAAGAATCCGTTAATGGGAATCCTAATTTGTTGGAGCAAACTGAAAAATCACTTCAAGATATGAGCTACTGGACATGGTCTGACCTTTTGATCACCTTGAAGCAGTGCCAGGATTTAACGTTATTCGCAGGTTGTTCTTCTATGATGCTAGAGAGGTGCTTGGAATCCTTAGTTGGGAGGCTAATTTTGGCCAGTGAAGCAAGTCCATGTCCATCCACTTGTTCTACTGAAAGTTATAATGGGTTTCGTTTTTCATGCGAATCTAAAAGCACTGAGAGTGTAAAGACAAGTACTTTCTCTCGTTCATCATGGTGGTTTGAAGATCTTGTGTTTCTCTGTCCCTTGTTGGTTCAAATGTTGGTGAAGGCTATGCTTTGGCGTAAACTAGAGCATGTTATAATCAGTAGGTTTCTGATGTATTACCAGAAGGCAAAGTTTTCCACTGCTACAACAGATGAGAAGCGCAAGATCATAGAAATGGTGATAGACATGCATTATAGTATGGATCAAAGTGTTGTTTCTTGCAAGACTTTGTTTGGGATTCTCCGAATTACTTTGAGTTTGAACATAAGTAAATGTATCAGGAACAAGTTGGAGAACATGATTGGTGGCCATTTGGATCAAGCAACTCTAGACAATCTACTTGTTCCCTCACCTTATGGAATAAGCTACTTATATGACGTGAATCTTATTCTGAGGTTCTTGAAATCATTCCTGCGTCGAGGAAATTGTCTAGTTGGTCCAGGTCCTTCTCGGATGAGGAAAGTTGGTAGCTTGATGGATCTGTATATAGCAGAAATAGCTCCTGATCCTTGTTTAAAACCTTCTAAGTTCTTGGCTCTTGTCACAGCACTCCCAGATTCTGCAAGAGATTCCTATGATGAACTCTACCATGCAGTGGACATGTATCTAGAGGTGCATGGTGGTTTGTCAGAGGAAGAAAGGGTGAAGATATGCTGTAGTTTAAATTATGAGAAACTTTCAACAAAGGCTTGCCTACATCTTTCTCAAAACACAAAATTCCCTTCAAGATCTGCAGTTCAGGCTCTGGTTGTTCAGCAATCGAAGCTCAAAACCTTACTTCTTAGCACTCCCTCCACTACTCCTTTCACCGTTTCGCCGCGTAGTTGCAGTGATGTTGGTGGAACAAAAAACAGAACAAGTGAACAGGTGGTGCTGTACTCCGGGAAATTTCAAGTTTCAAAGCCTGGCGACAAATTGTCATCACATTTGCAAGGAATACAATGGAGGGTTTCGGAATTGGAGAACATTTGTAGGAAACTGCAAACCCAGATGGCAAAGATGATGAGGTCAAGAGTGTCAGGTCATAGTTATTCAAGATCATTGCCCAAGCTCTGTTCATGA 3138 0.413 MKSELKGSTATSISIQYPSLLNAPPHTTTSPDLSGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPLGDTNQRLTSCFLRALVSRASRVCPVPMSFNGRTTCIQRRLMSVTELAGYVDLIPWHSFGFSASNSAIFKAIHGFPRVHILDFSITHCMQWPTLIDALAKRPQGPPHLKITLPSTRPPVPPLVNISTQEVGLRLANFAKFRNVVFEFNVIGQHSTSSELISNVNNNEYYSSSFQFESLLSQLNAATLNLREDEALVINCQNWLRYLSDERKGSFQNSASARDSFINLIKSLNPRIVLLVDEDCDLSAPSLTSRITTCFNYLWIPFDALETFLPKDSRQRVEYECDIGQKIENSISFEGVERIERLESGVKMSQRMKNGGFFSVPFCDETVREVKGLLDEHASGWGMKREEDMLVLTWKGHNSVFATAWVPNETTDDHMVVPGRSRPDRRKQPVFHRFVKRLQEMDRSKREKEKRLHFEIMELNCNLEVDINGEETFIVDKNIVGQYSGKFIKLFGKNNGVSRKLKVIFHDFPGGASGFELILRFVYNNGKSNITPSNLLLAHSAAKFMEMKESVNGNPNLLEQTEKSLQDMSYWTWSDLLITLKQCQDLTLFAGCSSMMLERCLESLVGRLILASEASPCPSTCSTESYNGFRFSCESKSTESVKTSTFSRSSWWFEDLVFLCPLLVQMLVKAMLWRKLEHVIISRFLMYYQKAKFSTATTDEKRKIIEMVIDMHYSMDQSVVSCKTLFGILRITLSLNISKCIRNKLENMIGGHLDQATLDNLLVPSPYGISYLYDVNLILRFLKSFLRRGNCLVGPGPSRMRKVGSLMDLYIAEIAPDPCLKPSKFLALVTALPDSARDSYDELYHAVDMYLEVHGGLSEEERVKICCSLNYEKLSTKACLHLSQNTKFPSRSAVQALVVQQSKLKTLLLSTPSTTPFTVSPRSCSDVGGTKNRTSEQVVLYSGKFQVSKPGDKLSSHLQGIQWRVSELENICRKLQTQMAKMMRSRVSGHSYSRSLPKLCS 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0542 1045 ProSiteProfiles NPH3 domain profile. 694 947 IPR027356 -
Sto12g0542 1045 Pfam GRAS domain family 50 449 IPR005202 -
Sto12g0542 1045 ProSiteProfiles GRAS family profile. 40 450 IPR005202 -
Sto12g0542 1045 Pfam NPH3 family 695 923 IPR027356 -
Sto12g0542 1045 Coils Coil 1002 1029 - -
Sto12g0542 1045 SUPERFAMILY POZ domain 504 594 IPR011333 -
Sto12g0542 1045 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 511 1045 - -
Sto12g0542 1045 ProSiteProfiles BTB domain profile. 505 569 IPR000210 GO:0005515
Sto12g0542 1045 PANTHER OS12G0117600 PROTEIN 511 1045 IPR043454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0542 Sto-Chr12 3508184 3514606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0542 37 451 GRAS Transcription Factor Family AT3G49950 47.506 2.04e-117 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto12g0542 GRAS 3.8e-84 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0542 - - gmx:100784792 744.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0542 12 3508184 3514606 Sto12g0542 12 3508184 3514606 ECH