Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0519 ATGGCTGACATGGATCGCTCTTCTGATGATATTTCTGTAGATTCAACAGCTTCCAAGGTTGAGTTTTCTGAAGATGAGGAAACCCTTATAACCAGGATGTATAATCTTGTTGGTGAGAGGTGGTCTTTGATTGCTGGAAGAATCCCTGGAAGAACAGCAGAGGAAATAGAGAAGTACTGGAATTCCAGATATTCAACTAGCGAATAA 207 0.4058 MADMDRSSDDISVDSTASKVEFSEDEETLITRMYNLVGERWSLIAGRIPGRTAEEIEKYWNSRYSTSE 68
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0519 68 Gene3D - 21 64 - -
Sto12g0519 68 PANTHER TRANSCRIPTION FACTOR TRY-LIKE 12 67 - -
Sto12g0519 68 MobiDBLite consensus disorder prediction 1 20 - -
Sto12g0519 68 ProSiteProfiles Myb-like domain profile. 14 64 IPR001005 -
Sto12g0519 68 SMART sant 18 66 IPR001005 -
Sto12g0519 68 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 68 IPR017930 -
Sto12g0519 68 SUPERFAMILY Homeodomain-like 20 64 IPR009057 -
Sto12g0519 68 Pfam Myb-like DNA-binding domain 19 62 IPR001005 -
Sto12g0519 68 CDD SANT 21 61 IPR001005 -
Sto12g0519 68 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 12 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0519 Sto-Chr12 3395636 3396295 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0519 22 65 MYB Transcription Factor Family AT5G14750 54.545 1.22e-14 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto12g0519 Myb_DNA-binding 2.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0519 - - dzi:111287942 118.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0519 12 3395636 3396295 Sto12g0519 12 3395636 3396295 ECH