Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0512 ATGCCTGCCGGGATTATGATTCCGGCCAGAAACATGCCCTCCATCATTCCAAGGAACAACAACAACGTTGCTGCTGCTGCCTTTGGTTCATCCTCAGCCCTTACTCTTGGCCAGCAGTCAAACATGATGGAAGCAGGTCAGCTGCACCCTCTGGACATGGCTCCCAACACATCGGAAAGCGACATCCCCAGAATCCGAGACGACGACTTCGACACGGCCACTAAGTCCGGCAGTGAGAACCAAGACGGTGGAGCCTCCGGCGACGACCAAGACCCGCGTCCCAAGAAGAAGCGCTACCACCGCCACACCCAGCATCAGATCCAAGAAATGGAAGCGTTCTTTAAGGAGTGCCCTCACCCAGATGATAAGCAAAGGAAGGAGCTGAGCCGGGAATTAGGGTTAGAGCCATTGCAGGTGAAGTTCTGGTTCCAAAACAAACGCACCCAGATGAAGACCCAACATGAGCGGCACGAGAATTCACACCTTAGAGCCGAAAATGAGAAGCTTCGGGCGGATAACATGAGGTACAGAGAAGCTCTTAGCAATGCCTCCTGTCCTAATTGTGGTGGCCCTACTGCTATTGGAGAAATGTCCTTCGATGAGCATCATTTGAGACTTGAGAATGCCCGCTTAAGGGAagagATTGATAGGATATCAGGAATAGCTGCAAAGTACGTAGGGAAGCCAGTGGTGAGCTATCCCCTACTGTCGTCCCCTTCATCGGTGCCTGGTCGTGGGTTGGAAGTTGGGGGTTATGGGGAGATGTACGGAGGAGGGGGAGATGTTTGGAGGTCCGTAAGCGGAGTGAACGAAGCGGATAAGCCGATGATAATAGAGCTGGCGGTTGCAGCCATGGAGGAACTGGTGAGGATGGCACAGATGGGGGAGCCTCTCTGGATGACCACCCTCGATGGGACCACCACTGTGCTTAATGAAGATGAATACGTCAGGACATTCCCTCGAGGAATTGGTCCTAAACCCCCTGGCTTCAAGTGTGAAGCTTCTCGAGAGACTTGTCTTGTCATCATGAACCATATCAACCTTGTCGAGATTCTCATGGACGTCAACCAATGGTCCACTGTGTTTTCTGCTATAGTGTCAAGAGCCATGACTATGGAAGTACTATCAACAGGAGTGGCTGGAAACTACAACGGAGCCTTGCAAGTGATGACAGCAGAGTTGCAAGTGGCATCACCACTGGTGCCAACTCGAGAGAGCTATTTTGTGAGGTACTGTAAACAGCACGCAGACGGGAGCTGGGCAGTAGTGGATGTGTCTCTGGATAATCTGCGCCCTACTCCTTCCGTCCGATGTAGAAGAAGGCCTTCAGGTTGCTTAATCCAAGAAATGCCCAATGGCTATTCCAAGgtgACATGGATTGAGCATGTAGAAGTGGACGATAGAGGTGTTCATAATCTATACAAGCAGCTTGTGAGTTCAGGGCATGCATTTGGGGCCAAACGTTGGCTTGCAACCTTAGATCGACAGTGTGAACGCCTTGCTAGTGCCTTGGCATCCAACATTCCTACCACTGATGTTGGGGtgATAACAAACCAAGATGGGAGGAGGAGTATGTTGAAGCTGGCAGAGAGAATGGTTATAAGCTTCTGTGGTGGAGTGAGTGCTTCTACTGCTCACACGTGGACAACCCTGTCTGGAACGGGTGCTGATGATGTACGGGTGATGACCCGTAAGAGCGTGGATGACCCGGGACGACCTCCTGGTATTGTTCTCAGTGCTGCTACTTCCTTTTGGCTTCCAGTGCCTCCAAAGCGAGTCTTTGATTTCCTGCGCGACGAGAACTCCAGAAATGAGtGGGATATACTTTCCAACGGCGGAGTGGTCCAGGAAATGGCACACATAGCGAATGGACGAGATACGGGAAATTGTGTATCCCTACTTCGAGTGAATAGTGCTAATTCGAGCCAAAGCAACATGCTGATATTACAAGAGAGCTGCACGGACTCAACGGGATCATTTGTAATATATGCTCCTGTGGATATAGTAGCGATGAACGTGGTCCTAAACGGAGGAGACCCAGACTACGTGGCACTTCTTCCTTCTGGATTTGCTATCCTCCCCGACGGCAGCACGCCTCATGCTGAAACTGCCCACGGTGGCTCCCTCTTGACCGTTGCTTTCCAAATCTTGGTTGATTCCGTTCCAACCGCCAAGCTCTCCCTTGGCTCTGTTGCTACCGTCAATAATCTCATTGCTTGCACCGTTGACAGAATTAAGGCTTCTTTATCTTGCGACGCTCCATGA 2265 0.5086 MPAGIMIPARNMPSIIPRNNNNVAAAAFGSSSALTLGQQSNMMEAGQLHPLDMAPNTSESDIPRIRDDDFDTATKSGSENQDGGASGDDQDPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENSHLRAENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISGIAAKYVGKPVVSYPLLSSPSSVPGRGLEVGGYGEMYGGGGDVWRSVSGVNEADKPMIIELAVAAMEELVRMAQMGEPLWMTTLDGTTTVLNEDEYVRTFPRGIGPKPPGFKCEASRETCLVIMNHINLVEILMDVNQWSTVFSAIVSRAMTMEVLSTGVAGNYNGALQVMTAELQVASPLVPTRESYFVRYCKQHADGSWAVVDVSLDNLRPTPSVRCRRRPSGCLIQEMPNGYSKVTWIEHVEVDDRGVHNLYKQLVSSGHAFGAKRWLATLDRQCERLASALASNIPTTDVGVITNQDGRRSMLKLAERMVISFCGGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGSTPHAETAHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVDRIKASLSCDAP 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0512 754 Pfam START domain 280 499 IPR002913 GO:0008289
Sto12g0512 754 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677
Sto12g0512 754 ProSiteProfiles START domain profile. 270 502 IPR002913 GO:0008289
Sto12g0512 754 SUPERFAMILY Bet v1-like 519 746 - -
Sto12g0512 754 MobiDBLite consensus disorder prediction 61 75 - -
Sto12g0512 754 MobiDBLite consensus disorder prediction 50 104 - -
Sto12g0512 754 Gene3D - 83 170 - -
Sto12g0512 754 SMART START_1 279 499 IPR002913 GO:0008289
Sto12g0512 754 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981|GO:0006355
Sto12g0512 754 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 50 751 - -
Sto12g0512 754 SUPERFAMILY Bet v1-like 271 501 - -
Sto12g0512 754 Coils Coil 147 179 - -
Sto12g0512 754 SUPERFAMILY Homeodomain-like 88 159 IPR009057 -
Sto12g0512 754 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 50 751 IPR042160 -
Sto12g0512 754 SMART HOX_1 94 157 IPR001356 GO:0003677
Sto12g0512 754 Pfam Homeodomain 96 151 IPR001356 GO:0003677
Sto12g0512 754 CDD homeodomain 96 154 IPR001356 GO:0003677
Sto12g0512 754 CDD START_ArGLABRA2_like 274 498 - -
Sto12g0512 754 Gene3D - 338 495 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0512 Sto-Chr12 3346159 3349881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0512 65 752 Homeobox Transcription Factor Family AT1G05230 80.719 0.0 1147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto12g0512 START 3.9e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0512 K09338 - gmx:100797992 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0673 7 4923348 4926645 Sto12g0512 12 3346159 3349881 CCT
Sto12g0512 12 3346159 3349881 Sto12g0512 12 3346159 3349881 ECH