Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0509 ATGGCGGAGGCCGTCTTCATTACAAGGCAAGGCCTCATGGTTGTGGTTAGGACTCTATTCCTCTTGGTTTTCTGCTTGTGGATCCCCACAGAAGTGGTGGCTAGGACTGGAAATACCATTGCAAATAATAGTAAAATTCCTTCAAGACCAAGTGTTGTGAGAATTGGAGCCCTGTTTACTCTTGATTCGGTCATTGGAAGATCAGCTAAGGCTGGAATTTTAGCTGCCATTGAAGATGTTAATAATAGTACAAGCGTTCTCCCTGGTGTTAAAATGGAATTTATTTTACATGATACAAACTGCAGTGGGTTTCTAGGAACAGTGGAAGCTTTGCAATTGATGGAGAATGATGTAGTTGCTGCAATTGGGCCACAGTCATCTGGAATAGCTCATGTCATCTCTCATGTTGTAAATGAATTGCATGTTCCCCTTCTATCTTTTGGGGCAACAGATCCCACCCTTGCTTCTCTGCAGTACCCCTATTTCATCCGCACTACCCAGAATGACTATTTTCAGATGAATGCCATTGCAGAATTGATTGACTATTATGAATGGAGAGAGGTAATTGCAATTTATGTGGATGATGATAATGGAAGAGGTGGAATATCCGCACTTGGTGATGCCTTGGCAAAGAAGCGAGCCAAGATCTCTTACAAGGCTGCATTTCCTTCCGGAGCTCCTATAAGTAATATCAGTGAGTTGTTAAATGGGGTAAATTTGATGGAATCACGGGTCTATGTTCTCCATGTGAACCCTGATTCTGGTTTGACAATCTTCTCTATTGCCAAGAAGCTAGGGATGATGAGCAGTGGTTATGTGTGGATTGCAACAGATTGGCTTCCTTCAAGGCTAGATGCATATGAACCTGTTAACCCAGACACTTTGAATATGTTACAAGGGGTTATTGCCTTACGCCATCATACTCCTGACACTGATCTCAAGAAGAGGTTTATGTCTAGGTTGAAAAACCTTAAAGACAAGGAGAGTACTCCAAGCTTCAATTCTTATGCACTATATGCTTATGATTCAGTTTGGTTAGTAGCCCGTGCCCTTGATGCTTTTATCAATGAAGGTGGGAATATATCTTTCTCCAGTGACTCCAGATTGCGTGAAACAAATGGAAGCATGTTGAATTTTGCATCACTTCGTACTTTTGATGGTGGTCCACAGTTTCTCCAGAAAATCCTCAACATGAACTTCACTGGGCTGAGTGGTCAAATTGGCCGTAGAATTGGTTATTGGACTAATTACTCGGGTCTGTCAATTGTAGCTCCTGAAATTTTGTATACAAAACCTCCAAACACTTCAATTAGCAATCAACATCTTAATGGTGTGATATGGCCAGGAGAGACTACAACTAAACCTAGGGGATGGGTGTTTCCCAACAACGGAAAGCCGCTTCGAATAGCAGTGCCAAACCGAGTAAGCTACCTGGAGTTTGTTGCCAAAGACAAGGACCCCCCTGGGGTAAAAGGTTACTGCATTGATGTCTTTGAAGCAGCCTTAAACCTGTTGCCTTATCCTGTCCCAcaccaatatatattatatggaaaTGGCGATAGAAATCCTAACTACAATGCACTTGTGAATGATGTTGCACAAAATAAATTTGACGCAGCTGTTGGAGATGTCACAATTGTCACAAATAGGACAAGGGTTGTGGATTTTACTCAACCTTTCATGGAATCAGGGTTGGTTGTAGTTGTTCCTGTCAAGGAGGTGAAATCAAGCCCTTGGTCATTCCTCAAGCCCTTCACTGCTGAAATGTGGTGTGTCACAGGtgccttctttctttttgtgggAGCTGTGGTATGGATTCTTGAGCACCGCCTCAATCACGAGTTCCGTGGCCCACCAAGGAAACAACTTATAACTGTTTTTTGGTACATATTTATGTGCTTTAACAATGACATTGCTTTTGCTTGTATTGTTTATCATAGCATATTGTTTGCTTTTGTATGGTGTATTGCAAATCAGAACTTAGGAGAAAACACCGTGAGCACTCTGGGGAGGTTGGTGTTGATAATATGGCTTTTTGTGGTGTTGATAATCAATTCAAGCTACACTGCTAGCTTGACATCGATCCTGACGGTGCAGCAACTGTCAACACAAATAGCAGGAATTGACAGCTTGATCTCAGGTACTCAACCTATCGGAATTCAAGATGGGTCATTTGCACGGAGATATCTGATAGATGAACTCAATATAGCTGAATCTAGGATTGTGACATTAAAAAACCAGCAGGCTTATATCGATGCCCTTATGCGTGGACCTGAAGGTGGAGGGGTAGTGGCCATTGTTGATGAGCTTCCTTACATTGAGATATTGATGTCCAACACTCAATGTCAGTTCAGAACTGTAGGCCAGGAGTTCACTAAAAGTGGATGGGGATTCGCATTCCAGAAGGACTCTCCACTGGCGGTGGATTTGTCGACGGCCATTCTTGAACTGTCGGAGAACGGAGACCTGCAAAAGATCCATGACAAATGGCTTTCAGTAAACAGTTGTCCTACACAAGTCAGTGATGTTGATTCAAACAAACTGTCTCTGAAAAGCTTCTGGGGGCTGTTTCTGATATGTGGGATTGCATGCTTCCTTGCTGTGACTGCATTCTTTGCAAGGgtgttttgtcaatatatgAAATTCATCCCACAGACTGAGGAGGAGGTTGCAGATGAACAAATAGAGGCAGCTAGGCCTAGAAGAAGGACAAGCAGATCCACCAGCTTCAAGAACATAATTGATTTTGTAGATAAAAAAGAAGCAGAAATTAAGGAGATACTGAGGCATAATAGTAACAAACGCCGACGAAGCCAGAGCTTAGACAGGCAATCTGATTATTCAATACCTTGA 2853 0.4175 MAEAVFITRQGLMVVVRTLFLLVFCLWIPTEVVARTGNTIANNSKIPSRPSVVRIGALFTLDSVIGRSAKAGILAAIEDVNNSTSVLPGVKMEFILHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLASLQYPYFIRTTQNDYFQMNAIAELIDYYEWREVIAIYVDDDNGRGGISALGDALAKKRAKISYKAAFPSGAPISNISELLNGVNLMESRVYVLHVNPDSGLTIFSIAKKLGMMSSGYVWIATDWLPSRLDAYEPVNPDTLNMLQGVIALRHHTPDTDLKKRFMSRLKNLKDKESTPSFNSYALYAYDSVWLVARALDAFINEGGNISFSSDSRLRETNGSMLNFASLRTFDGGPQFLQKILNMNFTGLSGQIGRRIGYWTNYSGLSIVAPEILYTKPPNTSISNQHLNGVIWPGETTTKPRGWVFPNNGKPLRIAVPNRVSYLEFVAKDKDPPGVKGYCIDVFEAALNLLPYPVPHQYILYGNGDRNPNYNALVNDVAQNKFDAAVGDVTIVTNRTRVVDFTQPFMESGLVVVVPVKEVKSSPWSFLKPFTAEMWCVTGAFFLFVGAVVWILEHRLNHEFRGPPRKQLITVFWYIFMCFNNDIAFACIVYHSILFAFVWCIANQNLGENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSTQIAGIDSLISGTQPIGIQDGSFARRYLIDELNIAESRIVTLKNQQAYIDALMRGPEGGGVVAIVDELPYIEILMSNTQCQFRTVGQEFTKSGWGFAFQKDSPLAVDLSTAILELSENGDLQKIHDKWLSVNSCPTQVSDVDSNKLSLKSFWGLFLICGIACFLAVTAFFARVFCQYMKFIPQTEEEVADEQIEAARPRRRTSRSTSFKNIIDFVDKKEAEIKEILRHNSNKRRRSQSLDRQSDYSIP 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0509 950 CDD GluR_Plant 465 831 - -
Sto12g0509 950 Gene3D - 762 796 - -
Sto12g0509 950 SMART GluR_14 468 833 IPR001320 GO:0015276|GO:0016020
Sto12g0509 950 PIRSF IGluLR_plant 12 638 IPR017103 -
Sto12g0509 950 PIRSF IGluLR_plant 634 949 IPR017103 -
Sto12g0509 950 PANTHER GLUTAMATE RECEPTOR 3.4 42 931 - -
Sto12g0509 950 Pfam Bacterial extracellular solute-binding proteins, family 3 490 832 IPR001638 -
Sto12g0509 950 Gene3D - 578 723 - -
Sto12g0509 950 CDD PBP1_GABAb_receptor_plant 54 424 IPR044440 -
Sto12g0509 950 Gene3D - 74 407 - -
Sto12g0509 950 MobiDBLite consensus disorder prediction 928 950 - -
Sto12g0509 950 Pfam Receptor family ligand binding region 72 407 IPR001828 -
Sto12g0509 950 SUPERFAMILY Periplasmic binding protein-like I 48 459 IPR028082 -
Sto12g0509 950 SUPERFAMILY Periplasmic binding protein-like II 445 832 - -
Sto12g0509 950 Pfam Ligand-gated ion channel 833 864 IPR001320 GO:0015276|GO:0016020
Sto12g0509 950 MobiDBLite consensus disorder prediction 928 942 - -
Sto12g0509 950 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 931 - -
Sto12g0509 950 Gene3D - 168 332 - -
Sto12g0509 950 Gene3D - 462 577 - -
Sto12g0509 950 Gene3D - 797 830 - -
Sto12g0509 950 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 66 82 - -
Sto12g0509 950 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 126 154 - -
Sto12g0509 950 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 340 352 - -
Sto12g0509 950 Coils Coil 917 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0509 Sto-Chr12 3331210 3335658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0509 1 798 Ion Channels AT1G05200 61.473 0.0 1046
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0509 K05387 - gmx:100799912 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0676 7 4936840 4941099 Sto12g0509 12 3331210 3335658 CCT
Sto12g0509 12 3331210 3335658 Sto7g0677 7 4946105 4951197 CCT
Sto12g0509 12 3331210 3335658 Sto12g0509 12 3331210 3335658 ECH