Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0495 CTGTTGTGGAATTTGTGGGAAGAGCAGCATGAGAGATGGATTGATGAGCATTTAGCAGAAGATGTTAACTTGGATTTTCAGAATGAACTAATGAATGAAACTGCTGAAGCGTCCTCTGAACTTACTATGCCTTTACTAAGATACCAAAAGGAATGGCTTGCTTGGGCTCTGAAACAGGAAAATTCTGCTATTAGAGGGGGTATTCTTGCAGATGAAATGGGGATGGGAAAGACTATTCAAGCAATTGCCCTTGTCCTTGCCAAACGTGAATTCCAGCACATGGTTTGTGAACCAGACGAATCCCCTTCTTTGCCAGGTTCATCTGCAGTCTTGCCTGCAATCAAAGGAACACTGGTTATTTGTCCTGTGGTTGCTGTCACTCAGTGGGTTAGCGAGATTGATAGGTTTACTTTAAAAGGAAGCACCAAGGTGCTGGTTTATCATGGTGCTAAGAGAGGGAGGTGTAGCAAACAGTTCTCAGAGTATGATTTTGTGATTACCACATACTCTATTGTTGAGTCTGAGTACAGGAAGTATATGATGCCTCCTAAGGAGAAAACTGAAAAACAGTCAAAGCagttaaagaaaaagaagagagaagtcAATAAAAAGATCAAGGAACATGAGAATGGTAAAGATCAAGAAATAAACATGAACTTAGACAATTCAGATGTCCCTCACAGGGAGAAGTCACTTCTACATGCTGTAAAGTGGCAGCGGATCATATTGGATGAGGCACACTATATAAAGTCTAGGCATTGTAACACTGCAAAAGCAGTTCTTGCTCTAGATTCTTCCTATAGATGGGCATTAAGTGGAACTCCCCTTCAGAATCGCGTGGGAGAACTGTATTCTCTGGTGCGGTTTTTGCAAATAGTTCCTTATTCCTATTACTTGTGCAAGGACTGTGATTGCAGGGCTCTTGATCATAGTGCCACTAAAGAATGTTCAAACTGCCATCACAGTTCTGTCAGACATTTCTGTTGGTGGAATAAATACATTGCCACACCAATTCAACTATATGGAACTGCCGATCCTGGAAGAAGAGCTATGATATTGCTTAAACACAAAGTTTTGAAGAACATAGTTCTAAGACGCACTAAAGTTGGCCGGGCTGCTGATCTTGCACTTCCGCCTCGAATTGTTTCATTAAGGAAGGATAGCCTGGATATAAAAGAGCAAGACTATTATGAATCGTTATACAATGAAAGTCAGGCCCAGTTTAATACATACATTGAATCAAATACTTTGATGAATAATTATGCTCATATATTTGACCTACTCACACGGCTGCGACAGGCTGTTGATCATCCATACCTTGTGGTATATTCTCAAACTGCAGCATCGAGAAGTGATATTAACGGTAGCAATGGCCGTGATGAAGAAGAATGTGGCCTTTGTCACGAGTCTGTAGAAGATTGTGTGGTTACTGCATGTAAGCACATATTTTGCAAGGTGTGCTTGTTAGACTTCTCTGCTTCCTTGGGACAAGTGTCATGCCCTAAATGTTCTAAATTACTGACGGTGGATTTAACTTCAAACAAGGATTTTGGGGATCAGTCTCATAAGACAACAATTAAGGGTTTCAGAACCTCAAGTATTTTAAACAGAATACGACTTGAGAATTTTCAGACAAGCACTAAAATAGAGGCTTTGAGAGAAGAGATAAGATTTATGGTAGAAAGGGATGGGTCAGCAAAAGGGATTGTTTTTAGCCAGTTCACATCATTTTTGGATCTCATAAACTACTCCCTGCTCAAGTCTGGTGTGTCTTGCGTTCAATTGAATGGGAGCATGTCATTGGCTGCCAGGGATGCTGCCATTAAGAGATTTACCGACGACCCAGACTGCAAAATTTTTCTCATGAGCTTGAAGGCTGGAGGTGTTGCTCTCAATTTGACAGTAGCATCACATGTTTTCCTCATGGACCCTTGGTGGAATCCAGCTGTGGAGCGTCAGGCTCAAGACAGAATTCACCGAATAGGGCAATATAAACCAATAAGAATAGTTAGGTTTGTCATTGAAAACACTATTGAGGAGAGGATTTTGAAGCTGCAAGAGAAGAAGGAACTAGTATTTGAAGGGACCATAGGCGGTTCTGCCGATGCTCTGGGGAAATTGACGGAGGCAGATATGAAATTCCTATTTGTTACCTGA 2157 0.4084 LLWNLWEEQHERWIDEHLAEDVNLDFQNELMNETAEASSELTMPLLRYQKEWLAWALKQENSAIRGGILADEMGMGKTIQAIALVLAKREFQHMVCEPDESPSLPGSSAVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSTKVLVYHGAKRGRCSKQFSEYDFVITTYSIVESEYRKYMMPPKEKTEKQSKQLKKKKREVNKKIKEHENGKDQEINMNLDNSDVPHREKSLLHAVKWQRIILDEAHYIKSRHCNTAKAVLALDSSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRALDHSATKECSNCHHSSVRHFCWWNKYIATPIQLYGTADPGRRAMILLKHKVLKNIVLRRTKVGRAADLALPPRIVSLRKDSLDIKEQDYYESLYNESQAQFNTYIESNTLMNNYAHIFDLLTRLRQAVDHPYLVVYSQTAASRSDINGSNGRDEEECGLCHESVEDCVVTACKHIFCKVCLLDFSASLGQVSCPKCSKLLTVDLTSNKDFGDQSHKTTIKGFRTSSILNRIRLENFQTSTKIEALREEIRFMVERDGSAKGIVFSQFTSFLDLINYSLLKSGVSCVQLNGSMSLAARDAAIKRFTDDPDCKIFLMSLKAGGVALNLTVASHVFLMDPWWNPAVERQAQDRIHRIGQYKPIRIVRFVIENTIEERILKLQEKKELVFEGTIGGSADALGKLTEADMKFLFVT 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0495 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 544 708 IPR001650 -
Sto12g0495 718 SMART helicmild6 579 662 IPR001650 -
Sto12g0495 718 Pfam SNF2-related domain 59 441 IPR000330 GO:0005524|GO:0140658
Sto12g0495 718 PANTHER - 1 202 - -
Sto12g0495 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 716 IPR027417 -
Sto12g0495 718 CDD DEXDc_SHPRH-like 45 366 - -
Sto12g0495 718 CDD SF2_C_SNF 546 673 - -
Sto12g0495 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 528 IPR013083 -
Sto12g0495 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 555 715 - -
Sto12g0495 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 202 - -
Sto12g0495 718 SMART ultradead3 41 311 IPR014001 -
Sto12g0495 718 ProSitePatterns Zinc finger RING-type signature. 479 488 IPR017907 -
Sto12g0495 718 ProSiteProfiles Zinc finger RING-type profile. 464 504 IPR001841 -
Sto12g0495 718 SMART ring_2 464 503 IPR001841 -
Sto12g0495 718 Gene3D - 383 716 IPR027417 -
Sto12g0495 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 366 IPR027417 -
Sto12g0495 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 58 293 IPR014001 -
Sto12g0495 718 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 222 553 - -
Sto12g0495 718 SUPERFAMILY RING/U-box 459 510 - -
Sto12g0495 718 Gene3D - 185 382 IPR038718 -
Sto12g0495 718 Gene3D - 19 184 IPR038718 -
Sto12g0495 718 PANTHER - 555 715 - -
Sto12g0495 718 PANTHER - 222 553 - -
Sto12g0495 718 Coils Coil 184 214 - -
Sto12g0495 718 MobiDBLite consensus disorder prediction 182 202 - -
Sto12g0495 718 Pfam Helicase conserved C-terminal domain 548 662 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0495 Sto-Chr12 3238398 3243846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0495 1 718 RAD5 or RAD16-like Gene Family AT1G05120 65.918 0.0 1021
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto12g0495 SNF2_N 1.1e-51 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0495 K15083 - gmx:100786366 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0495 12 3238398 3243846 Sto12g0495 12 3238398 3243846 ECH