Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0493 ATGGAATGGAGGAGAGGCCAAACCTTAGGCCACGGCTCCTCCGCCACCGTCTCCCTTGCCACCTTCCCTCACTCCGACGACGTGCTCGCCGTGAAGTCTTCGGAGCTATCACGGTCGGAGTCATTGCAGAGAGAGCAGAGACTCCTATCTTCTTTGTGCTCTCCTTATATAGTCTCCTACAAGGGATGTGACATAACTACAGAGCAAAACAAGCTCTTCTACAATCTCTTCTTGGAGTATATGCCCTTCGGCACACTTCTTCAAGCACTTCGCCGTCACGGTGGCCGTCTTGACGTCTCCGTCGTCGCCGGCTACACACGTCAGATTTTGCAGGGGATTCACTATTTGCATTCAAATGGGTTAGTGCATTGTGATATTAAGAGCACTAATATATTAGTTGGCGAGAATGGAGCCAAAGTTTCGGACTTTGGATGTGCGAAGCGGGTGTTTGATACGGCGGCGCCGATCAGCGGGACGCCAATGTTTATGGCGCCGGAGGTGGCGCGTGGGGAAGAACAGGGGTATGCTTGTGATATATGGGCACTTGGGTGCACCGTTATTGAAATGGCTTCTGGGGTATCGCCGTGGCGGAATGTCGCGGACCCATTCTCGGTTCTTCACCGGATCGCATATTCCGGCGAGGTGCCGGAGATTCCGGGGTTTTTGTCGGAGGAAGCAAAGGATTTCTTGAGGAAGTGCTTAAGGAGGAATCCAAGGGAGAGATGGACGGCTAGTCAATTGCTAAAGCATCCATTCGTTGGGGAATTGAATTCCAAATCCCAAGCGAAGGAGATTCAAGAATCGAATTCGAGTTCACCCACAAGTATACTTGAGCAGGGATTTTGGAATTCTGTGGAGGAATCCGAAATCCATGGGAAATTGATTCGTACGAGGTCTGGAAATTTGGGTGGTGATGATAGGATCAGAGGGTTAGCTGAATTTTCAGGGGAACCCGGTTGGAAATggaatgatgatgatggtgagaATTGGATCACAAGCAGAGGAAATAATGATGAAGTTAGAGATGCACAGAGCTCTGGTCAACCGCCTCCAACTGACTCCGAAGATTCTGATTATCAGCCAAGAGCCGATCATATTCCATGA 1104 0.4909 MEWRRGQTLGHGSSATVSLATFPHSDDVLAVKSSELSRSESLQREQRLLSSLCSPYIVSYKGCDITTEQNKLFYNLFLEYMPFGTLLQALRRHGGRLDVSVVAGYTRQILQGIHYLHSNGLVHCDIKSTNILVGENGAKVSDFGCAKRVFDTAAPISGTPMFMAPEVARGEEQGYACDIWALGCTVIEMASGVSPWRNVADPFSVLHRIAYSGEVPEIPGFLSEEAKDFLRKCLRRNPRERWTASQLLKHPFVGELNSKSQAKEIQESNSSSPTSILEQGFWNSVEESEIHGKLIRTRSGNLGGDDRIRGLAEFSGEPGWKWNDDDGENWITSRGNNDEVRDAQSSGQPPPTDSEDSDYQPRADHIP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0493 367 CDD STKc_MAPKKK 2 253 - -
Sto12g0493 367 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 345 - -
Sto12g0493 367 SUPERFAMILY Protein kinase-like (PK-like) 3 277 IPR011009 -
Sto12g0493 367 Gene3D Transferase(Phosphotransferase) domain 1 1 299 - -
Sto12g0493 367 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Sto12g0493 367 PANTHER MAP KINASE KINASE KINASE 1 345 - -
Sto12g0493 367 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0493 367 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0493 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Sto12g0493 367 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0493 Sto-Chr12 3230848 3234663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0493 1 336 MAP Kinase Kinase Kinase AT1G05100 50.571 7.75e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Sto12g0493 Pkinase 6.2e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0493 K20716 - qsu:112039629 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0694 7 5085716 5090893 Sto12g0493 12 3230848 3234663 CCT
Sto12g0493 12 3230848 3234663 Sto10g0481 10 3905384 3906545 ECH
Sto12g0493 12 3230848 3234663 Sto12g0493 12 3230848 3234663 ECH