Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0490 ATGGGCAGAGTGGGTGGACTCTCCATTGATTCAGATCCAGGTGGGAGCTTCTTCCACCTCCCTCATCATCATCCAATTGTCCTGAATTCCTTTCCTTCTGAAGAGCCTCCTCCTCCCATggatacttcttcttcttcttcttccaccacTTTCCAAATCAAAAGAACCTTGAATGAAGTCGACTTCTTCTCCACCAACAATGACAGGGCTTCCTCTGCCTCCGCTCATCCTTCTCCTCTCACTCCACCACCTATGCTTGATTTCAAAGTAAACacTGGTCTAAATCTCTTGACTACTAGCACGGACCAACCCATGGTGGACGCTGGGTTAGCCATAACACCTAAAATTGAAGATACAAGAGTCAAAAGTGATCAGGTGGCTGTTCTTCAAGCAGAGGTGGATAGAATAAAGGAAGAGAATGAGCGGCTAAGCAAAAGGGTGGCTGAAGTGAATACGCATATCAATGCCGTCAAGATGCACATAATGAACTTGATGCAGGATCGCAAGAAAAATAAAGGGGAAGAAGAGACTAGTGATCAGGATCACAAGCACCAACACCAAGAGCAAAACAAAGAAATtgggaataataataataataggagCAAAGGAGTGTTGGTGCCAAGACAATTCATGGATCTTGGGTTGGCTTCTATTAATGACGATgagggagatgatgatgatgatgaggacgATGATAGTGAGCAGCAGCAGGCTTCCCCTTGTTCAGGTGAGAATCCATCGGGATCCAAACAAATTGGTAAAACAGGAGATCAGCGTCCAAACAAGGTTGTTGATGATGATCAAGTGGAGGCCACCATGAGGAAAACAAGAGTTTCAGTTAGAGCTCGATCAGAGGCACCCATGTATGGGCAGAAGATGGCCAAAGGAAATCCATGCCCTCGGGCATATTACCGCTGCACTATGGCCACAAGTTGCCCCGTTAGAAAACAGGTACAAAGGTGTGCTGAGGACAGAACAATCCTAGTAACAACATACGAAGGGAAGCACAACCACGCGTTGCCGCCGGCGGCCGTGGGTATGGCGCAAGCGACATCATCGGCGGCGAAGATGCTGCTATCGGGATCAATGTCAAGCTGCAGCGGAGATGGGGTAATCAACGCAAGCTTCTTAACGAGGACGCTGCTTCCGTGTTGTTCAAGCACTATGCCCACTATTTCTGCCTCAGCTCCTTTCCCTACAGTCACATTGGACTTGACTCACTCTCCATCTACAACACCATCACCCACTCCCACCCAATTTCAATTCCCATTTTTCTCAAACCCCAACTTTCCAatggataataataataataatatcaacgACCCTTCCCAATTGGGTGCCGCTATAGCAGCCGATCCCAACTTCACTGCCCTTCTAGCCGCCGCTATTACTTCCCTTATGGCCAATGCTGCTTTGCCCAATCccaatcctaatcctaatcctaatgatGCTAACAACAATGCTGCCACCAATAATAGCGCCACTAACGGCATGCAACAAAATCAACAATAA 1512 0.4365 MGRVGGLSIDSDPGGSFFHLPHHHPIVLNSFPSEEPPPPMDTSSSSSSTTFQIKRTLNEVDFFSTNNDRASSASAHPSPLTPPPMLDFKVNTGLNLLTTSTDQPMVDAGLAITPKIEDTRVKSDQVAVLQAEVDRIKEENERLSKRVAEVNTHINAVKMHIMNLMQDRKKNKGEEETSDQDHKHQHQEQNKEIGNNNNNRSKGVLVPRQFMDLGLASINDDEGDDDDDEDDDSEQQQASPCSGENPSGSKQIGKTGDQRPNKVVDDDQVEATMRKTRVSVRARSEAPMYGQKMAKGNPCPRAYYRCTMATSCPVRKQVQRCAEDRTILVTTYEGKHNHALPPAAVGMAQATSSAAKMLLSGSMSSCSGDGVINASFLTRTLLPCCSSTMPTISASAPFPTVTLDLTHSPSTTPSPTPTQFQFPFFSNPNFPMDNNNNNINDPSQLGAAIAADPNFTALLAAAITSLMANAALPNPNPNPNPNDANNNAATNNSATNGMQQNQQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0490 503 SMART WRKY_cls 289 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto12g0490 503 MobiDBLite consensus disorder prediction 236 256 - -
Sto12g0490 503 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 50 493 IPR044810 GO:0003700
Sto12g0490 503 Pfam WRKY DNA -binding domain 289 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto12g0490 503 Coils Coil 126 153 - -
Sto12g0490 503 MobiDBLite consensus disorder prediction 168 202 - -
Sto12g0490 503 MobiDBLite consensus disorder prediction 168 190 - -
Sto12g0490 503 ProSiteProfiles WRKY domain profile. 289 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sto12g0490 503 PANTHER OS05G0567200 PROTEIN 50 493 - -
Sto12g0490 503 MobiDBLite consensus disorder prediction 472 503 - -
Sto12g0490 503 MobiDBLite consensus disorder prediction 216 267 - -
Sto12g0490 503 MobiDBLite consensus disorder prediction 481 503 - -
Sto12g0490 503 Gene3D WRKY domain 281 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto12g0490 503 MobiDBLite consensus disorder prediction 28 51 - -
Sto12g0490 503 SUPERFAMILY WRKY DNA-binding domain 288 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sto12g0490 503 MobiDBLite consensus disorder prediction 218 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0490 Sto-Chr12 3215827 3217722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0490 105 467 WRKY Transcription Factor Family AT4G04450 41.244 1.23e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sto12g0490 WRKY 7e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0490 - - gmx:100795177 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0697 7 5120539 5129717 Sto12g0490 12 3215827 3217722 CCT
Sto12g0490 12 3215827 3217722 Sto9g1901 9 23293450 23297134 ECH
Sto12g0490 12 3215827 3217722 Sto10g0483 10 3920785 3923429 ECH
Sto12g0490 12 3215827 3217722 Sto12g0490 12 3215827 3217722 ECH