Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0479 TTGGAAGATAATAAGAAGTCCGAGGCACATTTGACTTCAGCAGCTGCATTTGTGGAGGGTGGAATCCAGGACGCATGTGACGATGCTTGCAGCATATGTCTTGAAGTCTTCTGTGATAGTGATCCTTCAACGGTGACAAGTTGCAAGCACGAGTTTCATCTTCAATGCATTTTGGAATGGTGTCAGAGAAGCTCCCACTGTCCTATGTGTTGGCAACCCATTAGTCTTAAAGATCCAACAAGCCAGGAATTGCTTGAGGCAGTGGAAAGAGAGAGGAAATTTAGGTTCACTCCCTCAAGAAATGCCACAATATTTCATCATCCAACACTCGGGGATTTTGAGTTGCAACATTTGCCAGTTGGTGCAAATGATGCTGATCTTGAAGAGCGTATTATTCAACACTTGGCTGCTGCTGCTGCAATGGGCCGAGCACGTCACATTGTGAGAAGGGATGGCCAGAGAAACAGGTCATCGGCTCAAGGCCGCCCACAGTTCTTGGTATTTTCAACTCATTCTAGTTCGCCTCCCATGCCTCTTGCTTCTTCCTCTCCAACTCAGAGGGAAAATGAGGAACCAACTGCTGCAACCACAGTTTCCACTCTTTCTCCAACTCATGCAATTGGAGAAGAATCACTGCTGCCAACTCCAGTTCCTCCTGTTCAAGGTGACCAAGTTTCTGCTTCTGGATCTGGATCTACAGCTCTTGTTACTGATCACCAGGGATCGTCTTACAACAATAGATCTAGTCAGTCATCCCCAACACCTGGTAGTCAAGATAGAGCTGGCCCATCAGAGTTGCAATCATTTTCAGAATCTCTGAAGTCTAGGCTAAACGCCATGTCAATGAGATACAAGGAGTCGATTTCAAAGAgtactagaggcttgaaggatagATGGTTCTCTCGCAACTCCATGTCTGATCTGGGATATGGAGTAAGACAAGAGGTTAATGCAGGAATTGGAACTGTGTCACGCATGATGGAACATCTGGAAACCAGAGACAATGATACAACTAGTAGAAATTCTGCACCTACTAATTTAGAAGATGGTTCAGTCACAGGATCAAATGACCAACATATAACAGGCACTGGAGGTGACAATCTTTTGAGAGACAATACTACTAAAACATCTTGTGCTGCAGGTTCTAGTTCAAGTTAA 1158 0.4396 LEDNKKSEAHLTSAAAFVEGGIQDACDDACSICLEVFCDSDPSTVTSCKHEFHLQCILEWCQRSSHCPMCWQPISLKDPTSQELLEAVERERKFRFTPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIVRRDGQRNRSSAQGRPQFLVFSTHSSSPPMPLASSSPTQRENEEPTAATTVSTLSPTHAIGEESLLPTPVPPVQGDQVSASGSGSTALVTDHQGSSYNNRSSQSSPTPGSQDRAGPSELQSFSESLKSRLNAMSMRYKESISKSTRGLKDRWFSRNSMSDLGYGVRQEVNAGIGTVSRMMEHLETRDNDTTSRNSAPTNLEDGSVTGSNDQHITGTGGDNLLRDNTTKTSCAAGSSSS 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0479 385 MobiDBLite consensus disorder prediction 168 206 - -
Sto12g0479 385 MobiDBLite consensus disorder prediction 221 269 - -
Sto12g0479 385 Pfam Ring finger domain 29 70 IPR001841 -
Sto12g0479 385 MobiDBLite consensus disorder prediction 331 385 - -
Sto12g0479 385 ProSiteProfiles Zinc finger RING-type profile. 30 70 IPR001841 -
Sto12g0479 385 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 2 384 - -
Sto12g0479 385 MobiDBLite consensus disorder prediction 337 385 - -
Sto12g0479 385 MobiDBLite consensus disorder prediction 168 269 - -
Sto12g0479 385 SUPERFAMILY RING/U-box 23 78 - -
Sto12g0479 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 105 IPR013083 -
Sto12g0479 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 2 384 - -
Sto12g0479 385 SMART ring_2 30 70 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0479 Sto-Chr12 3146126 3148413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0479 27 70 C3H Transcription Factor Family AT5G15790 50.000 8.99e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0479 K19043 - gmx:100814908 611.683