Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0477 CTGTTAATATTACAGTCGGATATACGGAAGTGGTTTATGAAATCACATGACAAGAGCAATGCTACAAATCAGGCAAAGCCTTCTCCAGCTAAACCAGACCCCGAAAAACCAGAAGCCAGAGGCCAAGAAAGTTCAGGGAGGAAGAAAACTAGCAAATATTTTGCTACTGACAAAAACAAGCCAAAAGATGAAAAAGAGGCACAGGCGCCTCCTGCTAAAAGAAAGAATCCAAAGGACAGTGAGGAATCAAAGAAGTCAGCTGATAACACCCcgataaaaaaatcaaagagTGGGTCTGGTAGGGGAATTCCTCTTAAGTCTCCTGATTTGGAGGAAAGTGATGAAGAAGATAATGATAAAGATGCTGTGCCACCCCTGAAATCTGGTGGAAGGGGTCGTGGTGGAAGAGGAGCATCAGCACAATCATCTGCTGGACGGGGCAGAGGGGGTGGAAGGGGtggatttatgaattttggagAAAGAAGTGAGCCTCCACACAAAGGAGAAAAGGATGTTCCTGAAGGTGCCCCTGATTGTTTGGCCGGTCTGACTTTTGTAATCAGTGGAACACTGGAcagTTTGGAACGAGAAGAGGCAGAAGATTTGATTAAACGGCATGGTGGTCGTGTCACTGGATCAGTCAGCAAAAAAACGAATTATCTTTTATGTGATGAAGATATTGGGGGTCGAAAATCTGCAAAAGCCAAAGAGCTTGGTACTAAATTCCTCACTGAAGATGGGTTGTTTGACATGATCCGTGCATCAAAACCTGCAAAAACTCCTTCACAAGAAGATTCAAAAAAAATGGTGAAGAAGGTTCttccaagtgagtcaaaaagtcCACAAAAAGCTGGAGCCAAGGATGCAGGCTCCCAGTCTTCTGGCTCAGCTTCTACCCTAGTCAAGCCTAAGGCAGAAAGTTCTTTGCAGTCTTCTTCCATGTGGACAGAGAAGTATCGACCTAAAGTTCCAAATGACATCATAGGAAATCAATCCCTTGTTAAGCAACTCCACGATTGGTTGGCACATTGGAATGAGCAATTTCTTGACAGTGGAAAtaagaaaaaggggaaaaagCAAAATGATACAGGTGCCAAAAAAGCTGTCTTATTAAGTGGAACTCCCGGCATAGGAAAAACCACTTCAGCAAAGTTGGTCAGTCAGATGCTTGGTTTCCAAGCCATAGAGgttaatGCTAGTGATAGCCGTGGGAAAGCTGATAGCAAAATTGTTAAAGGAATCAGTGGAAGCAATGCAAACTCTATAAAGGAACTTGTCACCAATAAGGCTATGGGTGCTAATATGGATCGGGCAAAGCATTCCAAAACTGTGCTCATTATGGATGAAGTCGATGGCATGTCAGCTGGTGATAGGGGTGGCGTTGCTGATCTTATTTCTAGTATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGGTACAGCCAGAAACTGAAAAGTCTTGTGAACTACTGTTTGCTTCTTACCTTTCGTAAACCTACCAAGCAACAGATGGCAAAGAGGTTGGTGCAAGTTGCAAAAGCTGAAGGGCTTCAAGTTAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAATCAGTTACACTATATGAGCCTCTCAATGTCAGTTATTAACTATGATGACATAAGGCAGCGCCTTCTATCTAGCTCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAATGCTAGCAAGTTAAAGATGGATGAGAGGATAAACCTTAGCATGAGTGATCCTGACCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAACTATAGACCAAGCTTGGCTAGTAAGGATGACAATGGTTTGAAGCGCATGAAGTTAATTGCCAGTGCTGCTGAATCTATTGCTGATGGGGATATAGTGAATGTACAAATTCGAAGATATCGGCAGTGGCAGCTCTCTCAAGCTAGTTCTCTTGCATCGAGTATAATTCCTGCTTCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGGaattataatcggtttggtGGATGGCTGGGGAAGAACTCAACAATGGGAAAAAACTTGAGGCTTTTGGAAGATCTGCATGTTCACATTCTTGCTTCTCGCGAATCTAGTTCAGGAAGGGGAACCCTCCGTTTGGAATATCTTACGCATCTTCTTAAACAATTGACTGAACCACTGCGAGTCTTGCCTAAGGATGAGGCTGTAAAGAAAGTTATTGAATTTATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATAGTGGAGTTATCAAAATTCAAGGGTCATCCGAATCCACTAGATGGCATACAGCCTGCTGTTAAATCTGCGCTGACAAAAGCATACAAAGAAGAAAGCAAATCTCGGATGGTTCGAGCTGCAGATCTAGTTACTCTTCCTGGACCTAAAAAGGCCCCTAAGAAGCGAATTGCTGCTATTCTAGAACCAGCTGATGAAGGACCGGAACAGGGGGGAGGTGATGCCTTGGAAGAGAGTGAAGAAGAGAACTCCTCAGACACAGAGGAATTGGAAGGTACCCCAACTGGGGAGAAGCTGCAGTCAGAACTTGAGAGTTTAAATTCAAAGGCCATGCAAGTGCAGTTGGACTTGAAGGGTACAGGAAATTCAAAGGCCAAGAAACCTGCTGGGAGAGGCAAAGGTGCTTCTGCAGAGAAGGGTGGGCAAGCTTCAAGAGGAGGGGCAAAAAGAAAGAGGTGA 2781 0.4186 LLILQSDIRKWFMKSHDKSNATNQAKPSPAKPDPEKPEARGQESSGRKKTSKYFATDKNKPKDEKEAQAPPAKRKNPKDSEESKKSADNTPIKKSKSGSGRGIPLKSPDLEESDEEDNDKDAVPPLKSGGRGRGGRGASAQSSAGRGRGGGRGGFMNFGERSEPPHKGEKDVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSAKAKELGTKFLTEDGLFDMIRASKPAKTPSQEDSKKMVKKVLPSESKSPQKAGAKDAGSQSSGSASTLVKPKAESSLQSSSMWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNEQFLDSGNKKKGKKQNDTGAKKAVLLSGTPGIGKTTSAKLVSQMLGFQAIEVNASDSRGKADSKIVKGISGSNANSIKELVTNKAMGANMDRAKHSKTVLIMDEVDGMSAGDRGGVADLISSIKISKIPIICICNDRYSQKLKSLVNYCLLLTFRKPTKQQMAKRLVQVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRLLSSSKDEDISPFTAVDKLFGFNASKLKMDERINLSMSDPDLVPLLIQENYINYRPSLASKDDNGLKRMKLIASAAESIADGDIVNVQIRRYRQWQLSQASSLASSIIPASLLHGQREILEQGERNYNRFGGWLGKNSTMGKNLRLLEDLHVHILASRESSSGRGTLRLEYLTHLLKQLTEPLRVLPKDEAVKKVIEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEESKSRMVRAADLVTLPGPKKAPKKRIAAILEPADEGPEQGGGDALEESEEENSSDTEELEGTPTGEKLQSELESLNSKAMQVQLDLKGTGNSKAKKPAGRGKGASAEKGGQASRGGAKRKR 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0477 926 CDD BRCT_RFC1 175 253 - -
Sto12g0477 926 Pfam Replication factor RFC1 C terminal domain 642 804 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Sto12g0477 926 MobiDBLite consensus disorder prediction 285 313 - -
Sto12g0477 926 MobiDBLite consensus disorder prediction 872 893 - -
Sto12g0477 926 Coils Coil 870 890 - -
Sto12g0477 926 PIRSF RFC1 4 905 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Sto12g0477 926 CDD AAA 366 464 - -
Sto12g0477 926 MobiDBLite consensus disorder prediction 845 862 - -
Sto12g0477 926 MobiDBLite consensus disorder prediction 31 91 - -
Sto12g0477 926 Pfam BRCA1 C Terminus (BRCT) domain 177 252 IPR001357 -
Sto12g0477 926 SUPERFAMILY post-AAA+ oligomerization domain-like 573 718 IPR008921 GO:0003677|GO:0006260
Sto12g0477 926 Gene3D - 312 501 IPR027417 -
Sto12g0477 926 Gene3D - 574 683 - -
Sto12g0477 926 SMART AAA_5 365 503 IPR003593 -
Sto12g0477 926 ProSiteProfiles BRCT domain profile. 175 256 IPR001357 -
Sto12g0477 926 MobiDBLite consensus disorder prediction 836 926 - -
Sto12g0477 926 CDD HLD_clamp_RFC 502 560 - -
Sto12g0477 926 SMART BRCT_7 177 255 IPR001357 -
Sto12g0477 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 313 562 IPR027417 -
Sto12g0477 926 MobiDBLite consensus disorder prediction 13 176 - -
Sto12g0477 926 Pfam ATPase family associated with various cellular activities (AAA) 369 480 IPR003959 GO:0005524|GO:0016887
Sto12g0477 926 PANTHER REPLICATION FACTOR C SUBUNIT 1 18 901 - -
Sto12g0477 926 MobiDBLite consensus disorder prediction 260 274 - -
Sto12g0477 926 SUPERFAMILY BRCT domain 175 256 IPR036420 -
Sto12g0477 926 Gene3D - 502 572 - -
Sto12g0477 926 Gene3D BRCT domain 152 254 IPR036420 -
Sto12g0477 926 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 18 901 - -
Sto12g0477 926 MobiDBLite consensus disorder prediction 254 313 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0477 6 883 Core DNA Replication Machinery Family AT5G22010 68.087 0.0 1122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0477 K10754 - gmx:100802809 1327.38