Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0470 ATGTTTGGGAGGGCACCGAAGAAAAGCGATAACACAAGGTACTATGAAATCCTGGGGGTTTCGAAGAACGCCTCCCAGGATGATTTAAAGAAGGCTTACAAGAAAGCCGCTATCAAAAATCATCCTGACAAGGGTGGTGATCCGGAGAAGTTTAAAGAGCTGGCCCAAGCTTATGAGGTTCTGAGCGACCCCGAGAAACGTGAGATATATGATCAATATGGTGAAGATGCTCTTAAGGAAGGAATGGGTGGAGGCGGCGGCGGTCATGACCCATTCGACATCTTCCAATCCTTCTTTGGTGGGAGCCCTTTTGGAGGTGGTAGCAGTAGAGGACGAAGACAGAGACGGGGAGAAGATGTGGTTCATCCTCTGAAGGTCTCTCTGGAGGACCTTTACCTCGGGACATCTAAGAAGCTCTCCCTCTCACGAAATGTGATATGCTCCAAGTGCAGTGGtAAGGGGTCGAAATCTGGGGCTTCCATGAAGTGTGCTGGTTGTCAAGGAACTGGCATGAAGGTTTCCATTAGGCACCTTGGTCCCTCTATGATTCAGCAAATGCAGCATCCTTGCAATGAATGTAAGGGTACTGGAGAAACTATCAATGACCGAGACCGCTGCCCACAGTGCAAGGGAGAGAAGGTTGTCCAAGAGAAGAAAGTACTTGAAGTTATTGTGGAGAAGGGAATGCAGAATGGACAGAAGATTACATTCCCTGGTGAAGCAGATGAAGCGCCAGATACAATTACTGGGGATATAGTCTTTGTCCTTCAGCAGAAGGAACATCCCAAATTCAGAAGAAAGGGAGAAGACCTTTTCGTAGAGCACACTCTATCCCTCACTGAGGCTCTATGTGGCTTCCAATTTGCACTCACTCACCTGGATGGCAGGCAACTCCTTATTAAATCCAACCCTGGGGAAGTTGTCAAGCCTGATGCATACAAGGCAATCAATGATGAGGGAATGCCAATGTACCAGAGGCCATTCATGAAGGGAAAGCTTTATATTCACTTCACTGTGGAATTCCCTGATTCCCTCAATCCCGACCAGGTTAAGGCTCTGGAGGCGGTACTGCCACCACGGCCTACGTCGCAGTTAACAGACATGGAACTAGATGAGTGTGAGGAGACTACACTTCATGATGTCAACATGGAGGAGGAGGCATATGATGAAGATGAGGATATGCCTGGTGGTGCTCAGAGAGTACAGTGTGCTCAGCAGTAA 1221 0.4824 MFGRAPKKSDNTRYYEILGVSKNASQDDLKKAYKKAAIKNHPDKGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGGGHDPFDIFQSFFGGSPFGGGSSRGRRQRRGEDVVHPLKVSLEDLYLGTSKKLSLSRNVICSKCSGKGSKSGASMKCAGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDRDRCPQCKGEKVVQEKKVLEVIVEKGMQNGQKITFPGEADEAPDTITGDIVFVLQQKEHPKFRRKGEDLFVEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDAYKAINDEGMPMYQRPFMKGKLYIHFTVEFPDSLNPDQVKALEAVLPPRPTSQLTDMELDECEETTLHDVNMEEEAYDEDEDMPGGAQRVQCAQQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0470 406 SUPERFAMILY Chaperone J-domain 8 107 IPR036869 -
Sto12g0470 406 SMART dnaj_3 12 66 IPR001623 -
Sto12g0470 406 CDD DnaJ_C 118 345 - -
Sto12g0470 406 Gene3D - 110 259 - -
Sto12g0470 406 CDD DnaJ 14 63 IPR001623 -
Sto12g0470 406 Gene3D - 261 343 - -
Sto12g0470 406 ProSiteProfiles Zinc finger CR-type profile. 134 218 IPR001305 GO:0031072|GO:0051082
Sto12g0470 406 Pfam DnaJ central domain 147 213 IPR001305 GO:0031072|GO:0051082
Sto12g0470 406 PANTHER DNAJ-LIKE-2, ISOFORM A-RELATED 6 406 IPR044713 GO:0006457|GO:0030544
Sto12g0470 406 MobiDBLite consensus disorder prediction 382 406 - -
Sto12g0470 406 PANTHER CHAPERONE PROTEIN DNAJ 2-RELATED 6 406 - -
Sto12g0470 406 ProSiteProfiles dnaJ domain profile. 13 74 IPR001623 -
Sto12g0470 406 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 144 216 IPR036410 -
Sto12g0470 406 SUPERFAMILY HSP40/DnaJ peptide-binding domain 113 271 IPR008971 GO:0006457|GO:0051082
Sto12g0470 406 SUPERFAMILY HSP40/DnaJ peptide-binding domain 264 353 IPR008971 GO:0006457|GO:0051082
Sto12g0470 406 CDD DnaJ_zf 147 213 IPR001305 GO:0031072|GO:0051082
Sto12g0470 406 Hamap Chaperone protein DnaJ [dnaJ]. 10 394 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Sto12g0470 406 Pfam DnaJ C terminal domain 121 342 IPR002939 -
Sto12g0470 406 PRINTS DnaJ domain signature 15 33 IPR001623 -
Sto12g0470 406 PRINTS DnaJ domain signature 46 66 IPR001623 -
Sto12g0470 406 PRINTS DnaJ domain signature 66 85 IPR001623 -
Sto12g0470 406 Gene3D - 147 213 - -
Sto12g0470 406 Pfam DnaJ domain 14 71 IPR001623 -
Sto12g0470 406 Gene3D DnaJ domain 10 109 IPR036869 -
Sto12g0470 406 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0470 Sto-Chr12 3066774 3068902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0470 14 73 C2H2 Transcription Factor Family AT1G74250 43.478 1.16e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0470 K09503 - gmx:547558 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0712 7 5235824 5238263 Sto12g0470 12 3066774 3068902 CCT
Sto12g0470 12 3066774 3068902 Sto12g0470 12 3066774 3068902 ECH
Sto12g0470 12 3066774 3068902 Sto7g0712 7 5235824 5238263 ECH