Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0449 ATGTCTTCTTCGTCTCATCCCCCGGACCAGATCATTCACTCCATGAAACGCCAACTCCCATTCTCCTCTATGAAGCCCCCCTTTGTTGCTCCCGCCGATTATCATCGCTTCGCACCCGACCATCGCCCACCTGCTGACCAAGAACCCGAGACCATCGTCGTTAAGTCCCCTCAATCGAAGCGTAAGAGTAGCAAAGCCGAATCCGAAGCTGATTCCGTTGATAAGATGACCCCAGGGTCCACTGAAGCAGCCAATAGTACTTTTCAGACCCCAATATCAGGAAAAATGGGGAAGGGAAGCAAAACATCAAGGCTTACGAAATGCAACAAAGCTGGACCCCAAACCCCAGGTTCAAATATTGGTTCTCCTTCTAGCAATAATCTTACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCGGAGGATGGTATTCTTGATCTGAATAAAGCTGCTGACACTCTAGAGGTGCAAAAGAGAAGGATATATGATATAACAAATGTTCTTGAAGGGATTGGACTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTTTCAAGGCCAGGGGAAGCTGATGATAATTTTGCTAGTTTGCAGACAGAAGTTGAAAATCTTACTATGGAGGAGCACCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGAGGGACCTTAGTGAAGAAGAAAACAATCAGAAGTGGCTTTTTGTCACTGAAGATGATATAAAGGGATTGCCCTGTTTCCAGAATGAAACCTTAATAGCTATTAAAGCTCCACATGGCACCACTCTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGAATAGTCCTCAGAAGCACAATGGGCCCGATAGATGTTTACCTTGTTAGTCAATttgaagaaaagtttgaggagATCAATGGAGTTGATGCAGCACCCGACCTTCCAATCAGTCCAGAGTCTAACAGGCATTCTGCAACAGTGATCTCCGAGGAGAGAGGGAAGGACATAGAAATGCAGGGACAAGATGGTCAGAGAGCTTGTTCAGATTATAGTGCCTCGCAGGACTTTGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTACTGGCTTCTATCAGATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAACGTATCCTCTTTTTGGACTTACTGTCTCCTTTATACTACTTGCATGTGCTCTGCTCTAGAAGGGAAgCTGGAGTTGAATGGAATGAACTGGATACACTTCATGAAGATTATTGCATGCCTCAGGTGAGCACACCACGACCTGAAACTCCTCCCTCAAACACGAGTCAGATACCCTCTGCAGCTAAACCTAATGGAGGCTGA 1434 0.4421 MSSSSHPPDQIIHSMKRQLPFSSMKPPFVAPADYHRFAPDHRPPADQEPETIVVKSPQSKRKSSKAESEADSVDKMTPGSTEAANSTFQTPISGKMGKGSKTSRLTKCNKAGPQTPGSNIGSPSSNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDNFASLQTEVENLTMEEHRLDEQIREMQERLRDLSEEENNQKWLFVTEDDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDAAPDLPISPESNRHSATVISEERGKDIEMQGQDGQRACSDYSASQDFVSGIMKIVPSDVDSDADYWLLSDADVSITDMWRTERILFLDLLSPLYYLHVLCSRREAGVEWNELDTLHEDYCMPQVSTPRPETPPSNTSQIPSAAKPNGG 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0449 477 SUPERFAMILY E2F-DP heterodimerization region 213 317 IPR037241 -
Sto12g0449 477 MobiDBLite consensus disorder prediction 1 131 - -
Sto12g0449 477 SMART E2F_TDP_2 135 200 IPR003316 GO:0005667|GO:0006355
Sto12g0449 477 PANTHER TRANSCRIPTION FACTOR E2F 13 472 IPR015633 GO:0000978|GO:0006357
Sto12g0449 477 Coils Coil 213 254 - -
Sto12g0449 477 Pfam E2F/DP family winged-helix DNA-binding domain 137 200 IPR003316 GO:0005667|GO:0006355
Sto12g0449 477 Coils Coil 151 171 - -
Sto12g0449 477 PANTHER TRANSCRIPTION FACTOR E2FB 13 472 - -
Sto12g0449 477 MobiDBLite consensus disorder prediction 74 131 - -
Sto12g0449 477 Gene3D - 129 202 IPR036388 -
Sto12g0449 477 MobiDBLite consensus disorder prediction 459 477 - -
Sto12g0449 477 CDD E2F_DD 211 317 IPR032198 GO:0046983
Sto12g0449 477 Pfam E2F transcription factor CC-MB domain 216 316 IPR032198 GO:0046983
Sto12g0449 477 Gene3D - 207 317 - -
Sto12g0449 477 MobiDBLite consensus disorder prediction 451 477 - -
Sto12g0449 477 SUPERFAMILY "Winged helix" DNA-binding domain 135 198 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0449 Sto-Chr12 2866635 2871013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0449 10 476 E2F-DP Transcription Factor Family AT5G22220 54.747 1.02e-156 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sto12g0449 E2F_CC-MB 3.2e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0449 K06620 - gmx:100819817 692.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0449 12 2866635 2871013 Sto12g0449 12 2866635 2871013 ECH