Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0430 ATGGATCCTCTTCCTCTCCAACCTGGGTTTCGCTTCTACCCTACTGAAGAAGAGCTTGTGTCCTTCTACCTCCTCAACAAACTCCAAGGCCAACGACACGACATCCACCGAGTCATCCCTGTCGTTCCCGTGTTCGACGTTGAGCCTTGGCACCTCCCCAGTTTAGCAGGGGAGAAGTGTCGCGAAGATAAAGAACAGTGGTTTTTCTTTTCACCCAGACAAGAGCGAGAGGCCAGAGGAGGGAGGCCCAATAGAACCACCGCTTCTGGCTACTGGAAGGCTACCGGCTCTCCCGGTTACGTCTACTCCTCCCATAACAAAGTCATCGGGGTCAAGAAAACCATGGTGTTTTACAAAGGCAAAGCTCCCACCGGAAGGAAAACCAAGTGGAAGATGCACGAGTACAGAGCCATTAATCAACCCTCCAACTCCCCAACCTACACTCCCAAGTTGAGGCACGAGTTCAGCTTGTGCCGGGTTTATGTGATTTCGGGAAGCTTTCGGGCTTTTGATCGACGCCCATTGGAGTGGTGGGGCCCTCACACCGATATGCCTTCCACTTCTACTGCTACTGCTGCAAATGTTGATCAAGAAATTGCAAATGCAGGGGTGGATATGGATCGCTCAAGCTCAAGCTCCCCTCAAACTTCCCACTCAGGGGGAGATAATAATACCATTACAACTAATGCCATCGTGCAACTGCAAGAACCTCTCTGGGAATGGGAACAACTTAATTGGCTCTGA 744 0.5108 MDPLPLQPGFRFYPTEEELVSFYLLNKLQGQRHDIHRVIPVVPVFDVEPWHLPSLAGEKCREDKEQWFFFSPRQEREARGGRPNRTTASGYWKATGSPGYVYSSHNKVIGVKKTMVFYKGKAPTGRKTKWKMHEYRAINQPSNSPTYTPKLRHEFSLCRVYVISGSFRAFDRRPLEWWGPHTDMPSTSTATAANVDQEIANAGVDMDRSSSSSPQTSHSGGDNNTITTNAIVQLQEPLWEWEQLNWL 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0430 247 Pfam No apical meristem (NAM) protein 8 136 IPR003441 GO:0003677|GO:0006355
Sto12g0430 247 Gene3D NAC domain 15 166 IPR036093 GO:0003677|GO:0006355
Sto12g0430 247 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 6 246 - -
Sto12g0430 247 ProSiteProfiles NAC domain profile. 6 163 IPR003441 GO:0003677|GO:0006355
Sto12g0430 247 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 246 - -
Sto12g0430 247 MobiDBLite consensus disorder prediction 205 225 - -
Sto12g0430 247 SUPERFAMILY NAC domain 4 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0430 Sto-Chr12 2746651 2747577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0430 9 246 NAC Transcription Factor Family AT5G22380 59.751 4.91e-96 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto12g0430 NAM 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0430 - - gmx:100780264 331.257
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0755 7 5625296 5630460 Sto12g0430 12 2746651 2747577 CCT
Sto12g0430 12 2746651 2747577 Sto12g0430 12 2746651 2747577 ECH