Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0421 ATGCCTCGTGGAAATACAAATTCTTCGTCAGTTGTTAAATCAACTGAACCTGAAAAGCCGAATGAATCTGATGAGAAAGTGGATTATGATGAGGCCAATGATCCTGAGGAAATGACAGAAGAGGAAATTGaatatgaagaagaagaagaagaagaagaagaagaagaagaagaagaggaggaggaggaagaagaagaggaaatagAAGAGATAGAAGAAGAGGAGGGGGAggaggaagagattgaagaagtGGAAGATGATGATGCCATGCAAAACCATAGCAGTGATGAGGCGAAGGTAGAAGATGAGGATGAGAAGGAAAAGCATGCTGaacttctttctcttcctccccACGGGTCTGAAGTATACATCGGTGGTATTCCTCATGATGCCTCAACAGAAGACTTGAAGGCTTTTTGTGAGTCTATTGGGGAAGTTACAGAGGTTCGAGTTATGAAGGGAAAAGACTTATCTGAAAATAAGGGCTTTGCTTTTGTGACTTTTAGAAGTGTGGAAATGGCTTGTAAAGCAATGAATGAGCTGAATAATAAAGAATTTCAGggtaaaaaaataaaatgctcGAAATCTCAAGCAAAACACCGTATTTTCATTGGTAATGTTCCAAGAAGTTGGGGAGAGAAAGATCTGAGGAAGGTTGTAACTGAGATTGGGCCTGGAGTTACTACTGTAGAACTAGTCAAGGATTTGAAGAACACAAGCAATAACCGAGGCTTTgcttttattgattattataacCATGCATGTGCTGAATATTCAAGGCAAAAGATGATGAACCCAAAATTTAAGCTAGGTGACAATGCTCCAACTGTTAGCTGGGCTGACCCTAAAAGTGCCGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAACTTACCTAAGAATGTAACTCAAGACCAGTTAATGAAACTTTTTGGCCACCATGGGAAGATCACCAAGGTGGTTCTGCCACCAGCAAGGTCTGGGCAAGAAAAGAACAGAATTGGTTTTGTACATTTTGTAGAGAGGTCAAGTGCTATGAAAGCACTTAAAAACACTGAAAGATATGAATTAGACGGTCAACTTTTGGAGTGCTCTCTAGCGAAGCCTCAGGCTGATCAAAAGTCTGGAGGATCAAATGTGCAGAAGTCAGGATTGCTTCCAAGCTATCCACCACGTGTTGGTTATGGTTTGGTTGGGGGTGCCTATGGTGCACTTGGTGCAGGATATGGTCCTGCAGCTCTGTCACAGCCCATGGTATATGGAAGGGGTCCAACTCCTGGTGGTGGAATGGCTATGATGCCCATGCTTTTGCCTGATGGACGGATTGGATATGTCCTGCAACAACCACAACCAGGAGTGCAACCACAAACCCCACCTCCACATCAGAGGGGTGGCAGAAATGGCGGTGGGAGTGGTAGTAGGAGTGGAGGCAGTTCAAGCAAGGGAAGACACAGCAATGATAATGGCCAAGGCCGAAGATATCGCCCTTATTAG 1503 0.3985 MPRGNTNSSSVVKSTEPEKPNESDEKVDYDEANDPEEMTEEEIEYEEEEEEEEEEEEEEEEEEEEEEIEEIEEEEGEEEEIEEVEDDDAMQNHSSDEAKVEDEDEKEKHAELLSLPPHGSEVYIGGIPHDASTEDLKAFCESIGEVTEVRVMKGKDLSENKGFAFVTFRSVEMACKAMNELNNKEFQGKKIKCSKSQAKHRIFIGNVPRSWGEKDLRKVVTEIGPGVTTVELVKDLKNTSNNRGFAFIDYYNHACAEYSRQKMMNPKFKLGDNAPTVSWADPKSADSSAASQVKAVYVKNLPKNVTQDQLMKLFGHHGKITKVVLPPARSGQEKNRIGFVHFVERSSAMKALKNTERYELDGQLLECSLAKPQADQKSGGSNVQKSGLLPSYPPRVGYGLVGGAYGALGAGYGPAALSQPMVYGRGPTPGGGMAMMPMLLPDGRIGYVLQQPQPGVQPQTPPPHQRGGRNGGGSGSRSGGSSSKGRHSNDNGQGRRYRPY 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0421 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 372 IPR000504 GO:0003723
Sto12g0421 500 MobiDBLite consensus disorder prediction 91 114 - -
Sto12g0421 500 CDD RRM_SF 122 194 - -
Sto12g0421 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 120 198 IPR000504 GO:0003723
Sto12g0421 500 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 282 IPR000504 GO:0003723
Sto12g0421 500 MobiDBLite consensus disorder prediction 1 16 - -
Sto12g0421 500 MobiDBLite consensus disorder prediction 27 90 - -
Sto12g0421 500 MobiDBLite consensus disorder prediction 471 488 - -
Sto12g0421 500 Gene3D - 5 200 IPR012677 -
Sto12g0421 500 MobiDBLite consensus disorder prediction 448 500 - -
Sto12g0421 500 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 474 - -
Sto12g0421 500 SMART rrm1_1 201 278 IPR000504 GO:0003723
Sto12g0421 500 SMART rrm1_1 295 368 IPR000504 GO:0003723
Sto12g0421 500 SMART rrm1_1 121 194 IPR000504 GO:0003723
Sto12g0421 500 Gene3D - 201 281 IPR012677 -
Sto12g0421 500 PANTHER RNA RECOGNITION MOTIF 1 474 - -
Sto12g0421 500 MobiDBLite consensus disorder prediction 1 127 - -
Sto12g0421 500 Coils Coil 36 84 - -
Sto12g0421 500 SUPERFAMILY RNA-binding domain, RBD 117 285 IPR035979 GO:0003676
Sto12g0421 500 SMART rrm2_1 121 194 IPR003954 GO:0003676
Sto12g0421 500 SMART rrm2_1 295 368 IPR003954 GO:0003676
Sto12g0421 500 Gene3D - 283 399 IPR012677 -
Sto12g0421 500 SUPERFAMILY RNA-binding domain, RBD 290 396 IPR035979 GO:0003676
Sto12g0421 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 365 IPR000504 GO:0003723
Sto12g0421 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 192 IPR000504 GO:0003723
Sto12g0421 500 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 265 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0421 Sto-Chr12 2694247 2697550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0421 120 376 Eukaryotic Initiation Factors Gene Family AT1G71770 25.926 3.69e-17 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0421 K13161 - gmx:100785076 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0421 12 2694247 2697550 Sto12g0421 12 2694247 2697550 ECH