Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0417 ATGGATGTGGAAGGGCTGAAAAAgctaaacaaaaataagaaaCTGGTTAAGAAACTTGCCAAAAAGTATCACGCCTTCTTAGCTTCTGAAGCAGTTATTAAGCAGATTCCCCGTCTTTTGGGTCCTGGTCTCAACAAGGCAGGGAAATTCCCCACACTTGTTACTCACCAAGAATCTCTAGAGTCTAAGGTCAACGAGACCAAGGCCATGGTAAAATTTCAGCTAAAGAAGGTGCTTTGCATGGGAGTTGCTGTGGGAAATGTTAGTATGGAGGAGAAACAAATCTTTCAAAATGTACAACTGAGCGTCAACTTCCTTGTCTCTTTGTTGAAGAAGAATTGGCAGAATGTGAGGTGCTTGTATCTGAAGAGCACGATGGGGAAATCGTACCGCGTCTTTTGA 402 0.4154 MDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0417 133 PANTHER 60S RIBOSOMAL PROTEIN L10A-3 1 131 - -
Sto12g0417 133 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 1 131 - -
Sto12g0417 133 Pfam Ribosomal protein L1p/L10e family 2 127 IPR028364 -
Sto12g0417 133 CDD Ribosomal_L1 23 132 IPR028364 -
Sto12g0417 133 ProSitePatterns Ribosomal protein L1 signature. 33 52 IPR023673 -
Sto12g0417 133 Gene3D - 1 71 IPR016095 -
Sto12g0417 133 PANTHER 60S RIBOSOMAL PROTEIN L10A-1-RELATED 1 131 - -
Sto12g0417 133 SUPERFAMILY Ribosomal protein L1 1 133 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0417 Sto-Chr12 2668931 2670270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0417 1 133 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 92.481 7.92e-74 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0417 K02865 - gmx:100527698 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0417 12 2668931 2670270 Sto12g0417 12 2668931 2670270 ECH