Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0416 ATGTACCATCATCAAGGAAAGAAcattcattcttcttcttccagaATGCCAATCCCATCTGAAAGGCATATGTTCCTTCAAACAGGAAATGGGTCTGGTGATCCTGGGCTTGTCCTCTCCACTGATGCTAAGCCTAGATTGAAATGGACACCAGATCTTCATGCCAGGTTTATAGAAGCAGTTAATCAGTTAGGCGGAGCAGACAAGGCAACTCCTAAAACCGTAATGAAGCTTATGGGTATTCCAGGGCTTACCTTGTATCATCTAAAGAGCCATCTTCAGAAGTACAGATTGAGCAAAAATATGCATGGACAAAGTAACAATGTGACACACAAAATCACGACCAACGTTAACGCTGGTGCAGCAACTGGAGAAAGACTTTCTGAAACAAATGAAACTCATATGAACAATTTAAGCCTCGGGCCACAGCCAAacaaAGATTTACACATAAGCGAGGCCCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTAAATGAGCAACTTGAGGTACAGAGACACTTGCAGCTTCGCATAGAGGCGCAAGGAAAATACCTTCAGGCTGTACTGGAAAAAGCTCAAGAAACACTTGGTAGACAGAATTTGGGGATAGTGGGACTTGAGGCAGCTAAAGTTCAACTCTCAGAGTTGGTGTCCAAAGTATCCTCTCAGTGTCTAAATTCTGCATTTTCAGAGCTGAAGGAATTACAAGGATTCTGCCCACAGCAGCAACCACAAAACAACCAGCCTACCGACTGCTCCATGGACAGCTGCCTCACATCCTGCGACGGATCTCAAAAGGAGCAAGAAACACAAAATGGAGGGATGGGCTTGAGACCCTTCAATGGCCACCACAGCCACACATTCAATATGGAACGAAAGGAAGCACCCATGACGAGGAACTCTGAGCTCAAGTGGTGTAATGATGAAGTGAAAAAGAACACCACCTTTCTCAACAATCCTTTGGGGAAGACTACAGAAAGAAGAAGCTACGCTGTGGAAAGAAGCCCTTGCAGCAACTTATCTATGAGCATTGGACTTGAAGGAGACACAGAGAATAATGGAAGCAGCATGTATCCTCCTGAGAGACTAATGATGGGAAGAGAGTCATCAGATAGTAAGACAGATTCAATAAAAGCAGTGGAAGATAAGGTTTCTATGAGTCATTACTATCAGATAGTAAGACTGGACCTCAATACTCGTCAAGAAAATGATGCTGCTATGAGCTGTAAAAACCTGGACTTGAATGGATTCAGCTGGAGCTGA 1263 0.4339 MYHHQGKNIHSSSSRMPIPSERHMFLQTGNGSGDPGLVLSTDAKPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNMHGQSNNVTHKITTNVNAGAATGERLSETNETHMNNLSLGPQPNKDLHISEALQMQIEVQRRLNEQLEVQRHLQLRIEAQGKYLQAVLEKAQETLGRQNLGIVGLEAAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQQPQNNQPTDCSMDSCLTSCDGSQKEQETQNGGMGLRPFNGHHSHTFNMERKEAPMTRNSELKWCNDEVKKNTTFLNNPLGKTTERRSYAVERSPCSNLSMSIGLEGDTENNGSSMYPPERLMMGRESSDSKTDSIKAVEDKVSMSHYYQIVRLDLNTRQENDAAMSCKNLDLNGFSWS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0416 420 Pfam Myb-like DNA-binding domain 46 97 IPR001005 -
Sto12g0416 420 Gene3D - 43 101 - -
Sto12g0416 420 MobiDBLite consensus disorder prediction 341 357 - -
Sto12g0416 420 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 101 IPR017930 -
Sto12g0416 420 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 44 99 IPR006447 GO:0003677
Sto12g0416 420 Pfam MYB-CC type transfactor, LHEQLE motif 149 195 IPR025756 -
Sto12g0416 420 MobiDBLite consensus disorder prediction 341 361 - -
Sto12g0416 420 Coils Coil 151 171 - -
Sto12g0416 420 PANTHER MYB-RELATED PROTEIN 2 2 420 - -
Sto12g0416 420 SUPERFAMILY Homeodomain-like 43 99 IPR009057 -
Sto12g0416 420 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 2 420 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0416 Sto-Chr12 2662232 2664559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0416 76 419 G2-like Transcription Factor Family AT3G04030 52.011 1.64e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto12g0416 Myb_DNA-binding 3.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0416 - - gmx:100810396 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0772 7 5701804 5703670 Sto12g0416 12 2662232 2664559 CCT