Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0415 ATGGGACTGCTAGGAGGGCGTCATGCTGAGGTTAAGCATGATGAAGCATACTATTTGCAATTCTGCATCAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAGGAGGCGATTGTTCTGCAAGGAGTTGAGATAAGAAATGATGAAGGCAAAGCACGTACGGGAGGCTCAAAGTCAGGAGGGGAAAGCACTACTGATTCAGGATCAGCAGTGAATACTACTGTTTCAAGCAAAAGTGAGGCTCAGTTTGAACCAGAATCGCCTATCAGTAAAAAGGCATCTTCTTCTTTAGATCAAAAGCAACAGCAAGTTCAACAACAGGAGATGGCAACTGATGCCTCAAGAACTGCCTTATCACAGAATCAATCACCTGCCAAATCACCTCATCAGGAAAagAGGAAGGGAGGTGGTTCTTCTTCTTCCGAGAAACAACAAGATGCAAAGACATTGAGACGTTTGGCTCAAAACAGAGAGGCTGCACGCAAGAGCCGTCTCAGGAAAAAGGCTTATGTGCAGCAGTTAGAGTCCAGTAGGATAAAGCTTACCCAGCTTGAACAAGAGCTTCAAAGAGCTCGCTCTCAGggaCTGTTCTTGGGATGTGCTGGTGCTGGAGGGAATGTAAGTTCTGgaGCTGCAATATTTGACATGGAATATGGAAGGTGGTTGGAAGAGGACCACCGGCACATAACGGAGCTACGTGGGGCGTTACAGGCGGGGCTGTCGGACGGAGAGCTTAGAATAATGGTGGAGGGATATGTGTCACATTATGACGAGATATTCCGTCTCAAAGGAGTGGCTGCAAAATCAGATGTGTTTCATCTTATTACTGGCATGTGGACTACTCCTGCTGAACGCTGCTTCCTTTGGATGGGTGGCTTTAGGCCCTCTGACCTCATCACgATGTTAATACAACAATTAGAACCACTAGCTGAGCAGCAGATAATGGGAATGTATGGCCTCAGACATTCTTCACAGCAAGCGGAAGAGGCTCTCTCTCAAGGCCATGAACAGCTCCAACACTCTCTTGTCGACACCATCGCCGGCGGCCCCTTTGGCGATGGCCTTCAACAGATGGTCGTAGCCATGACCAAGCTCTCCAATCTTGAAGGATTTGTCCGCCagGCTGATAACTTGAGGCAACAAAGCCTACACCAAATATGTCGATTGCTGACAATTCGTCAAGCAGCACGATGTTTTGTTGTGATTGGAGAGTACTATGCTCGCCTTCGTGCTCTTAGTTCTCTTTGGGCCTCAAGACCGAGAGAggCATTTATAAGCGACGAAAATTCATGCCAAACGACGACGGAGTTGCAAATGGTTCAACCTCCGAATCATTTTGGGAATTTCTGA 1350 0.4689 MGLLGGRHAEVKHDEAYYLQFCINQGSAFDFGELEEAIVLQGVEIRNDEGKARTGGSKSGGESTTDSGSAVNTTVSSKSEAQFEPESPISKKASSSLDQKQQQVQQQEMATDASRTALSQNQSPAKSPHQEKRKGGGSSSSEKQQDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQELQRARSQGLFLGCAGAGGNVSSGAAIFDMEYGRWLEEDHRHITELRGALQAGLSDGELRIMVEGYVSHYDEIFRLKGVAAKSDVFHLITGMWTTPAERCFLWMGGFRPSDLITMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGHEQLQHSLVDTIAGGPFGDGLQQMVVAMTKLSNLEGFVRQADNLRQQSLHQICRLLTIRQAARCFVVIGEYYARLRALSSLWASRPREAFISDENSCQTTTELQMVQPPNHFGNF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0415 449 Pfam bZIP transcription factor 146 188 IPR004827 GO:0003700|GO:0006355
Sto12g0415 449 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 146 190 IPR004827 GO:0003700|GO:0006355
Sto12g0415 449 ProSiteProfiles DOG1 domain profile. 211 419 IPR025422 GO:0006351|GO:0043565
Sto12g0415 449 MobiDBLite consensus disorder prediction 127 150 - -
Sto12g0415 449 Gene3D - 147 196 - -
Sto12g0415 449 PANTHER TRANSCRIPTION FACTOR TGA9 55 429 - -
Sto12g0415 449 MobiDBLite consensus disorder prediction 48 150 - -
Sto12g0415 449 MobiDBLite consensus disorder prediction 57 126 - -
Sto12g0415 449 Pfam Seed dormancy control 228 303 IPR025422 GO:0006351|GO:0043565
Sto12g0415 449 CDD bZIP_HBP1b-like 148 199 - -
Sto12g0415 449 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 151 166 IPR004827 GO:0003700|GO:0006355
Sto12g0415 449 Coils Coil 167 194 - -
Sto12g0415 449 SUPERFAMILY Leucine zipper domain 148 190 IPR046347 GO:0003700|GO:0006355
Sto12g0415 449 SMART brlzneu 144 209 IPR004827 GO:0003700|GO:0006355
Sto12g0415 449 PANTHER TRANSCRIPTION FACTOR TGA9 55 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0415 Sto-Chr12 2645097 2661312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0415 103 449 bZIP Transcription Factor Family AT1G08320 69.034 9.62e-180 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Sto12g0415 DOG1 6.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0415 K14431 - pop:7460056 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0778 7 5722601 5731994 Sto12g0415 12 2645097 2661312 CCT
Sto12g0415 12 2645097 2661312 Sto12g0415 12 2645097 2661312 ECH