Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0408 ATGTACTGCCCTCTCTCTGAGGACAGAAATTCACCAAATCTCTCTCAAGATATGGGATTGAGAGAGTACTTGTGCAATAATAGTATTGTACAAGACaacatcaccaccaccaccaccactaatCATCATCATAATACTAATTTCTACTTTCATGCTTCTGCATCATCAGCTCCAACTTTCATTGAATGGCTcaaaccatcatcatcatcttcatcttcttcttctttttctgatGATCGTGAGGTTGATCTTGATCAAAACGAGGTCGTTCCGCGCCAGACAATCCAGTTTTTGCCCACAAAGGAATTGCAAAAagtggatgatgatgatgaaatgtTTGGAATTGGATCAATTGGAGTAGTGAAGGAAGAGAAGGTGGCTTTGCACATTGGATTACCTACTTATAATCATAATCAATTAGAAGAAATTAGGTCAAGCTTGCAtggaataaattataataataatatgaagagtagagaaagagaagagagaaggttCTGGATTCCAACACCTGCACAGATCCTTATAGGGCCCATGCAGTTTGCTTGCTCCATATGCAGCAAGACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGGCATGGATCGGAATATCGAAAAGGAGCAGAGTCACTGAAAGGAACACAACCAGCAGCAATGCTGAGGCTGCCATGTTATTGCTGTGCTCAAGGGTGCAAGAACAACATCAACCACCCAAGGGCTAAGCCACTTAAGGACTTCAGAACCCTCCAAACCCACTACAAGAGGAAGCATGGCACCAAGCCCTTCATGTGTAGGAAGTGTGCCAAGACTTTTGCTGTCAAAGGGGATTGGAGGACCCATGAGAAGAACTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCTGATTTCAAGCACAAGAGGTCCCTTAAGGATCACATTAGGTCCTTCGGAAAGGGCCACAACCCCCATCCTTCTCTTGAGGGTTTTCATCACAATCACAAGGATTCCCAACAACAACTTACTTCATAA 1017 0.3786 MYCPLSEDRNSPNLSQDMGLREYLCNNSIVQDNITTTTTTNHHHNTNFYFHASASSAPTFIEWLKPSSSSSSSSSFSDDREVDLDQNEVVPRQTIQFLPTKELQKVDDDDEMFGIGSIGVVKEEKVALHIGLPTYNHNQLEEIRSSLHGINYNNNMKSREREERRFWIPTPAQILIGPMQFACSICSKTFNRYNNMQMHMWGHGSEYRKGAESLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCAKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEGFHHNHKDSQQQLTS 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0408 338 SUPERFAMILY beta-beta-alpha zinc fingers 173 204 IPR036236 -
Sto12g0408 338 MobiDBLite consensus disorder prediction 310 330 - -
Sto12g0408 338 SUPERFAMILY beta-beta-alpha zinc fingers 251 285 IPR036236 -
Sto12g0408 338 ProSitePatterns Zinc finger C2H2 type domain signature. 183 203 IPR013087 -
Sto12g0408 338 Gene3D Classic Zinc Finger 180 203 - -
Sto12g0408 338 Gene3D Classic Zinc Finger 261 323 - -
Sto12g0408 338 ProSiteProfiles Zinc finger C2H2 type domain profile. 181 208 IPR013087 -
Sto12g0408 338 PANTHER ZINC FINGER PROTEIN WIP2 55 331 IPR043584 GO:0003700|GO:0010468
Sto12g0408 338 MobiDBLite consensus disorder prediction 310 338 - -
Sto12g0408 338 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 55 331 - -
Sto12g0408 338 SMART c2h2final6 228 260 IPR013087 -
Sto12g0408 338 SMART c2h2final6 181 203 IPR013087 -
Sto12g0408 338 SMART c2h2final6 265 285 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0408 Sto-Chr12 2596657 2599411 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0408 57 328 C2H2 Transcription Factor Family AT1G08290 55.385 9.81e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0408 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0408 - - gmx:100802773 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0408 12 2596657 2599411 Sto12g0408 12 2596657 2599411 ECH