Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0398 ATGAAGATGATCGCTGCGTATTTGCTGGCTGTGTTGGGAGGGAACACATGCCCTTCAGCTGATGATCTGAAGCATATACTCGGCTCAGTTGGGGCTGAGGCTGATGATGAGACAGTTGAGTTTCTCTTAAATGAAGTTAAGGGCAAAGATATTACTGAGCTAATTGCTGCTGGAAGAGAAAAATTGGCTTCAGCACCATGTGGTGGAGGTGCTGTAGCTGCTGTTGCTGCACCTGCCGGCGGTGCAGCAGCTGGTGGTGGTGCTGCACCTGCGGCAGAGGCAAAGGAGGAAAAGAAGGTAGAAGAGAAAGAGGAGTCGGATGAGGACATGGGTTTCAGCTTATTCGACTAA 351 0.5014 MKMIAAYLLAVLGGNTCPSADDLKHILGSVGAEADDETVEFLLNEVKGKDITELIAAGREKLASAPCGGGAVAAVAAPAGGAAAGGGAAPAAEAKEEKKVEEKEESDEDMGFSLFD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0398 116 CDD Ribosomal_P2 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Sto12g0398 116 Gene3D - 1 59 IPR038716 -
Sto12g0398 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Sto12g0398 116 MobiDBLite consensus disorder prediction 92 106 - -
Sto12g0398 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 116 - -
Sto12g0398 116 Hamap 50S ribosomal protein L12 [rpl12]. 2 116 IPR027534 GO:0003735|GO:0005840|GO:0006414
Sto12g0398 116 MobiDBLite consensus disorder prediction 80 116 - -
Sto12g0398 116 Pfam 60s Acidic ribosomal protein 18 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0398 Sto-Chr12 2522150 2523402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0398 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 61.207 3.62e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0398 K02943 - egr:104452151 132.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0398 12 2522150 2523402 Sto12g0398 12 2522150 2523402 ECH
Sto12g0398 12 2522150 2523402 Sto7g0804 7 5995775 5997001 ECH