Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0397 ATGGAAGGAAATCAGAATGGCGGCGATGCAAAGTCGGCGATTCCGGGGAGTGAGGAGGAGGTCGTAATCGGGCCGGGGCCAGCCCCTCGCTCTCGACCCAAACGACCCCTCCAGTTCGAGCAGGCCTACCTCGACGCCTTACCCTCCGCAAACATGTATGAGAAAAGTTATATGCACCGTGATGTGGTTACCCATGTTGCTGTCTCAGATGCAGAATTTTTTATAACTGGAAGTGTTGATGGGCATTTGAAATTTTGGAAGAAGAAGCCTATTGGTATTGAGTTTGCAAAACACTTCAGATCCCATCTTGGTCCAATTGAAGGTCTAGCTGTTAGTATTGATGGTCTGCTTTGCTGTACAATATCAAATGATCACTCAgtgaaaatatatgatgtgatcAACTATGACATGATGGTCATGATTCGCCTGCCGTATGTCCCTGGTGCTGTTGAATGGGTTTACAAACAAGGGGATGTTAAAGCTAGGCTTGCCATCAGTGATAGAAACTCATCTTTTGTGCACATATATGATGCACGAGCTGGTTCAAATGAACCTATCATTTCTAAAGAGGTGCATGTGAGCCCTATTAAAGTCATGAAGTACAATCCAGTATATGATGCTGTGGTTTCGGCAGATGCAAAGGGGTTAATTGAATACTGGAATCCTACTACTCTTCAATTCCCAGAGAATGAGGtgaattttaaactaaaaagtGATACCAATCTCTTTGAAATTGTGAAATGCAAAACTTCTGTTTCAACTATTGAGGTCAGCCCAGACGGAAAGCAATTTTCCATAACATCACCTGATCGCAGGATACGTGTATTTTGGTTCCGAACGGGTAAACTAAGGCGAGTTTACGATGAATCACTGGAGGTGGCTCAAGATCTCCAAAGAAGTGACAATCCATTATATCGACTGGAAGCCATTGATTTTGGTCGAAGAATGGCTGTTGAGAAGGAAATAGAGAAGACAGAGAGTGCTCCACTTCCAAATGCAGTTTTTGATGAAAGTTCTAACTTTCTTATATATGCAACCTTGCTTGGGATAAAAATAATAAATTTGCACACCAATAAGGTTTCCCGAATACTCGGAAAGGTGGAGAACAATGACAGGTTCTTAAGAATAGCTTTATATCAAGGTGATCAAAGCAGTAAAAAAGTACGAAAGATTCCTTCAGCAGCAGCAAATGTCAACGAGAGCAAGGAACCTTTGACAGATCCCACTCTCTTGTGTTGTGCTTTCAAAAAACACAGGATATATTTATTCAGTCGGAGAGAACCAGAGGAGCCCGAAGATGCGACCAAGGGAAGAGATGTGTTCAATGAAAAGCCTCCTCCTGATGAACTTTTGGCTGTTTCAGATATTGGAAAGGCAGTTACAACATCACTTCCAGACAATGTGATTATGCACACTACTATGGGTGATATTCACATGAAGTTATACCCAGAGGAATGTCCAAAAACTGTTGAGAACTTTACAACTCACTGTCGAAATGGCTATTATGATAATCTTATTTTTCACCGGGTTATCAAAGGCTTCATGATACAAACAGGTGATCCTTTAGGAGATGGCACCGGTGGGCAATCTATTTGGGGGAGGGAATTTGAGGACGAATTTCACAAAAGTTTAAGACATGATAGGCCTTTCACGTTGTCAATGGCAAATGCGGGCCCAAATACGAATGGTTCTCAATTCTTTATCACCACAGTGGCCACTCCTTGGCTGGACAACAAGCACACTGTATTTGGTAGAGTTGTTAAGGGAATGGATGTCGTACAGGCTATAGAAAAGGTAAAGACAGACAGGACAGACAAGCCATACCAAGATGTTAAAATTCTAAACGTTACTGTACCAAAGTCTTGA 1866 0.4148 MEGNQNGGDAKSAIPGSEEEVVIGPGPAPRSRPKRPLQFEQAYLDALPSANMYEKSYMHRDVVTHVAVSDAEFFITGSVDGHLKFWKKKPIGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDHSVKIYDVINYDMMVMIRLPYVPGAVEWVYKQGDVKARLAISDRNSSFVHIYDARAGSNEPIISKEVHVSPIKVMKYNPVYDAVVSADAKGLIEYWNPTTLQFPENEVNFKLKSDTNLFEIVKCKTSVSTIEVSPDGKQFSITSPDRRIRVFWFRTGKLRRVYDESLEVAQDLQRSDNPLYRLEAIDFGRRMAVEKEIEKTESAPLPNAVFDESSNFLIYATLLGIKIINLHTNKVSRILGKVENNDRFLRIALYQGDQSSKKVRKIPSAAANVNESKEPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPPDELLAVSDIGKAVTTSLPDNVIMHTTMGDIHMKLYPEECPKTVENFTTHCRNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIEKVKTDRTDKPYQDVKILNVTVPKS 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0397 621 Pfam WD domain, G-beta repeat 97 131 IPR001680 GO:0005515
Sto12g0397 621 Pfam WD domain, G-beta repeat 63 87 IPR001680 GO:0005515
Sto12g0397 621 MobiDBLite consensus disorder prediction 1 35 - -
Sto12g0397 621 PANTHER PEPTIDYLPROLYL ISOMERASE DOMAIN AND WD REPEAT-CONTAINING PROTEIN 1 16 619 - -
Sto12g0397 621 CDD cyclophilin_WD40 469 616 - -
Sto12g0397 621 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 16 619 IPR044666 -
Sto12g0397 621 Gene3D - 46 443 IPR015943 GO:0005515
Sto12g0397 621 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 464 618 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 SUPERFAMILY Cyclophilin-like 465 618 IPR029000 -
Sto12g0397 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 481 496 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 507 519 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 550 565 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 565 577 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 578 593 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 SMART WD40_4 92 131 IPR001680 GO:0005515
Sto12g0397 621 SMART WD40_4 182 221 IPR001680 GO:0005515
Sto12g0397 621 SMART WD40_4 50 87 IPR001680 GO:0005515
Sto12g0397 621 SMART WD40_4 238 277 IPR001680 GO:0005515
Sto12g0397 621 SUPERFAMILY WD40 repeat-like 50 365 IPR036322 GO:0005515
Sto12g0397 621 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 468 618 IPR002130 GO:0000413|GO:0003755
Sto12g0397 621 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 502 519 IPR020892 GO:0003755|GO:0006457
Sto12g0397 621 Gene3D - 452 619 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0397 Sto-Chr12 2515252 2520749 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0397 468 618 U-box Gene Family AT5G67530 47.020 2.58e-41 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0397 K12736 - gmx:100792207 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0397 12 2515252 2520749 Sto12g0397 12 2515252 2520749 ECH