Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0382 ATGTCTACCTCCAAAAACCACCGCGCAAACCAGACTGAGACTCACCGGAGAGGAAAATTAGTCGATAAATCGTCGTCGTTTCACGGCCAGATCGTGGCGCCGATTCCCTCCCAACTCCGCCGACCGAAGACCGTGCCGGACCTAGTCTCTCACAGAAATAACACCGCATCTCCGCCGGAGGCTTTCCCCCGGCAACCGCCGAAGCTGCTGCTTCACGTGACCGTGCTGGGGAGCCTGGGACCTGTTAAGGTCGTGATTACGCCGGAATCAACCGTGGGCGATTTGGTGGCGGCGTCGGTCCAGCAATACCTCAAAGAAGGTCGCCGGccgttccttcccaccaccgaCCCCTCCGGCTTTGACCTCCATTATTCTCAGTTCAGCTTGGAAAGTCTGGATAGAGAGGAAAAGCTGATAGGACTTGGGTCGAGGAATTTTTTGTTATGCCCAAGGAAGTCGACGGCCGCCATGGACGGTGGCGCTGGAAAAGGCGGTAGCTGTCAGCTTCCTTTCGGTCCCAAACCCTACTCTGGTTGTGATTCTATCTCTCTTACTGCAATGGAGTTCTGGGGTGTTGAGGTCAAGGCTGGGGCGCCTGTTGAAGTAAGACCAGAGGTTTTGGGTAAATGCATACACCTTTCTCAGGCTGCACTTGGTGAGGCAAAGAAAGATAAAGCAATTGAACCTGTGCTCCTTTATCTGAAATTTGATGAACAGAAACTTGTTATAGGAACTCTTTCGCAGGAGAAATTCCCTCAATTATCATTTGATTTGGTTCTAGAGAAAAAGTTTGAGCTCTCTCACAATTGGAAAAATGGAAACAGCGAGGATGATGATGATCTCCCTATAATGACCAAAGATAATGtaaaaCCTGATGCAAAGACTGAAGTAGCAAAGGCTTCTGCATCTAAAAGTAATGATGTCAAGCTTGGTGGACCAAAAAAGCAAGTCAAAGAATTGTTGGGAGGTAATATTGGTAGTGGTGGTGAGAGTGACagcgatgaagatgatgatgaaaccCCTCCCAAGAAGGCTGATCAGGGTAAGAAGAGATCTAATGAGTCTGCATTGAAAACTCCTGTTCCTGCCAAGAAAGCAAAATCTTCCGCTCCTCAAAAGACCGGTGAGGCTTTCTTTTCATGCTTTGCTTCTTATGATGGTAAGAAAGTTGGCCATAAAGCAACTCCTTATCCCCAAAAGAAGGGGGGAAAGACTCCAAAAAGTGAAACCAAGGATCAGACTCCCAAATCTGGTGGACAGTTTACCTGCAAATCATGTAGCAAGTTTTTCACCTCAGAAGGTGGTCTGCAACAACATTCGAAGGCTAAGCATGGCGGTCAGTGA 1344 0.4658 MSTSKNHRANQTETHRRGKLVDKSSSFHGQIVAPIPSQLRRPKTVPDLVSHRNNTASPPEAFPRQPPKLLLHVTVLGSLGPVKVVITPESTVGDLVAASVQQYLKEGRRPFLPTTDPSGFDLHYSQFSLESLDREEKLIGLGSRNFLLCPRKSTAAMDGGAGKGGSCQLPFGPKPYSGCDSISLTAMEFWGVEVKAGAPVEVRPEVLGKCIHLSQAALGEAKKDKAIEPVLLYLKFDEQKLVIGTLSQEKFPQLSFDLVLEKKFELSHNWKNGNSEDDDDLPIMTKDNVKPDAKTEVAKASASKSNDVKLGGPKKQVKELLGGNIGSGGESDSDEDDDETPPKKADQGKKRSNESALKTPVPAKKAKSSAPQKTGEAFFSCFASYDGKKVGHKATPYPQKKGGKTPKSETKDQTPKSGGQFTCKSCSKFFTSEGGLQQHSKAKHGGQ 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0382 447 Gene3D Nucleoplasmin core domain 183 276 - -
Sto12g0382 447 MobiDBLite consensus disorder prediction 1 36 - -
Sto12g0382 447 MobiDBLite consensus disorder prediction 9 23 - -
Sto12g0382 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 421 447 IPR013087 -
Sto12g0382 447 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 328 443 - -
Sto12g0382 447 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 187 274 - -
Sto12g0382 447 Pfam Nucleoplasmin-like domain 189 270 IPR041232 -
Sto12g0382 447 MobiDBLite consensus disorder prediction 269 373 - -
Sto12g0382 447 MobiDBLite consensus disorder prediction 389 420 - -
Sto12g0382 447 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 328 443 - -
Sto12g0382 447 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 187 274 - -
Sto12g0382 447 MobiDBLite consensus disorder prediction 269 294 - -
Sto12g0382 447 MobiDBLite consensus disorder prediction 338 353 - -
Sto12g0382 447 ProSitePatterns Zinc finger C2H2 type domain signature. 423 444 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0382 Sto-Chr12 2419334 2426602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0382 187 440 C2H2 Transcription Factor Family AT3G44750 36.940 5.95e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0382 NPL 8.1e-09 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0382 - - gmx:100792094 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0822 7 6183675 6189527 Sto12g0382 12 2419334 2426602 CCT
Sto12g0382 12 2419334 2426602 Sto12g0382 12 2419334 2426602 ECH