Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0377 ATGGGGAAGAATAAGGTTACAGACGAACAATTATCCACCGTTCGGTCCATCGTTGGTTCCGAATATACTGAGATGGATATATATAGAGCCCTACACTTGGCCAACAACGACGCCACAGCTGCCATAAACATTATTTTTGACACCcccaatttcaaatttaaagagAGGTTAAGTGTAGGCACTCGTAGTAATTCCCAAGTTTCGCATCGTAGTCCTAGCTCTGATATTGGAACTGGAGGTGGGAGTCTCGTAGCGAAGTCCAAGCCAATTGATGCAGAAGACAAAATTTGCTCAGGGTCGGAAGCAAAAGTTGCCGACTCAGCTCCTAACTCAGGAGGTTATACACTTGAGGAAGTGGGAGAGCGTTCGAGTCCAGCTGGAAGTGATTGGTGGTTCGTGGGTTGTAGTGAAATGGCAGGGCTATCGACCTGTAAAGGTAGGACTATTAATGCTGGTGATCAAGTGTTGTTCAAGTTTCCTTTAAAGTCTGGTCATACTATGGCGTCCCCAGCTAAGGGATTCGGACGGGGACGACAGGCAGCAGCAACTTGTTCAGAGATAGTGCGATTCTATACTGAAGAAACCGGGGAGATTGGTAGAATTCCAAATGAATGGGCTCGGTGTCTCTTACCCCTTGTACGGGATAAGAAGGTTAAGATTGAGGGGCATTGTAAATTTGCTCCTACTAATTTGGGCATTATGGATACCATTCTTTTGTCAGTCAGTGTATTCATCAACAGTGCAATGTTTCGTAGACATCACCAGGTTTCTCTTAAGGATGCTACAAATTCCACTGATGAATCAGTGTTTCATCCTCTTCCAACCTTGTTTAGGTTGCTAGGCCTGAACCCTTTTAAAAAGGCAGAGTTCACTCCTGGTGACTTGTATTCAAAGAAGCGTCCTTTCAACCAAAAGGATAACTCTTCTCTTCAGGCTACATTACTGCACATAAAATCTAAGGATCCTTCTGTTAATGATAGTGAGATAGACAATGATGATTCTATATCTGAAGTTGATCTTGACAACATTGTTGGAGTTGGAGCCAGCTCTGAGCTAGAGGAAATGGACCCCCCAGGTAGTCTTCAGTGTGAACTGCGGCCCTATCAAAAGCAAGCTCTTCATTGGATGATCCAGCTGGAGAAGGGACGGCCTAGGGATGAGGCAGCAACAACCCTTCATCCATGTTGGGAGGCTTATCACTTGGCGGACAAGAGGGAGCTGGTTGTTTATTTGAATGTTTTTTCTGGTGAAGCTACCACAGAATTTCCTAGCACACTTCAAATGGCTAGAGGAGGAATATTGGCAGATGCTATGGGGCTTGGAAAGACCATTATGACCATAGCCCTCCTCCTTGCCCATTTAGGGAGGGGTGGATTATCAAGTAGTCAACCCGTGGCTCAGCCTTTCACTGAAGACGGAGAACTCAATGGCACGGTGCAAAACTCTTCAAAGATACCTAAGAAGGCAACCAAGTTTTCAGGTTTTGATAAACTGATGAAGCAGAAGAGTGCTCTTACAAGTGGTGGCAGTCTGATAATATGTCCCATGACTCTTCTGGGACAGTGGAAGGCAGAGATTGAAACACATGTGCAACCTGGATCACTGTCTTTATACGTTCATTATGGACAGAGTAGACCCAAAGATGCAAAAACTCTAGCTCAGAGTGATGTTGTAATTACTACATATGGTGTCTTAACCTCTGAATTTTTCAGTGAGAATGCAGAGGATAATAGTGGGCTTTTCTCAATTCGGTGGTTTAGGGTggttcttgatgaggcacataCAATAAAATCTTCCAAAAGCCAAATTTCTATTGCAGCTACTGCTTTAGTTGCTGACAGACGTTGGTGTCTTACTGGCACCCCTATTCAAAACAACCTTGAGGATATTTACAGTCTTCTTCGATTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTCATTCAGAAACCATTTGAGGAGGGTGATGAGAGAGGGCTGAAGTTGGTTCAATCCATCTTGAAGCCAATCATGTTGAGAAGGACCAAACATAGCACGGATCGAGAGGGAAAGCCTATACTAGTTCTTCCTCCGGCTGATGTGCAGATAATTTACTGTGAACTCACGGAAGCTGAAAAGGACTTTTATCAGGCACTATTCAAAAGATCTAAGGTCAAGTTTGATCAATTTGTTGAGCAAGGGCGTATTCTTCATAATTATGCTTCCATATTGGAGTTGCTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGACACTCAAGAATTTTCTGATCTAAACAAACTAGCTAAGCGTTTCCTCAAAGGAACCCATAATGCTTCAGGAGGGGAAGCAAAAGACGCACCATCACGGGCTTATGTTCAAGAAGTTGTTGAGGAGCTACAAAAGGGTGAACAAGGAGAGTGTCCAATATGTCTTGAAGCATTTGAAGATGCAGTATTGACACCTTGTGCACACCGCTTATGCCGGGAATGCCTCTTGGCAAGTTGGCGGAATTCTACCTCTGGTTTGTGCCCTGTTTGTAGGAAAACAATCAGCAGGCAGGATCTGTTAACAGCCCCCACAGGAAGTCGGTTTCAGATTGATATTGAGAAGAACTGGGTAGAGTCATGCAAGATAACTGTCCTTTTGCACGAACTTGAAAATCTTCGCTCATCAGGATCTAAGAGCATTGTCTTCAGCCAGTGGACTGCTTTTCTAGACCTCTTGCAGATTCCCTTTACTAGGAATAACATACCATTTGTTCGTCTTGATGGGACTTTAAGTCAGCAACAGCGTGAAAAAGTAATTAGGCAATTCTCAGAAGACAGTGATATCCTGGTGCTATTGATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACAGCAGCTTCAAATGCGTTTGTCATGGATCCATGGTGGAATCCAGCTGTAGAGGAGCAAGCTGTTATGCGTATTCATCGCATTGGACAAACAAAGAATGTGGCTATTAAACGATTTATAGTGAAGGCAACTAGGTTGGAGGAATTCCTTCACAGGTTACAAGGAATCTGGTTGGGAACTAGTGAGGCACGGGGAACTGTTGAGGAGAGAATGGAAGCAGTGCAAGCACGCAAACAGCGAATGATTTCCGGTGCCTTGACTGATCAAGAAGTTCGAAGTGCACGAATTGAGGAATTGAAGATGCTTTTTACTTAG 3210 0.4349 MGKNKVTDEQLSTVRSIVGSEYTEMDIYRALHLANNDATAAINIIFDTPNFKFKERLSVGTRSNSQVSHRSPSSDIGTGGGSLVAKSKPIDAEDKICSGSEAKVADSAPNSGGYTLEEVGERSSPAGSDWWFVGCSEMAGLSTCKGRTINAGDQVLFKFPLKSGHTMASPAKGFGRGRQAAATCSEIVRFYTEETGEIGRIPNEWARCLLPLVRDKKVKIEGHCKFAPTNLGIMDTILLSVSVFINSAMFRRHHQVSLKDATNSTDESVFHPLPTLFRLLGLNPFKKAEFTPGDLYSKKRPFNQKDNSSLQATLLHIKSKDPSVNDSEIDNDDSISEVDLDNIVGVGASSELEEMDPPGSLQCELRPYQKQALHWMIQLEKGRPRDEAATTLHPCWEAYHLADKRELVVYLNVFSGEATTEFPSTLQMARGGILADAMGLGKTIMTIALLLAHLGRGGLSSSQPVAQPFTEDGELNGTVQNSSKIPKKATKFSGFDKLMKQKSALTSGGSLIICPMTLLGQWKAEIETHVQPGSLSLYVHYGQSRPKDAKTLAQSDVVITTYGVLTSEFFSENAEDNSGLFSIRWFRVVLDEAHTIKSSKSQISIAATALVADRRWCLTGTPIQNNLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEEGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADVQIIYCELTEAEKDFYQALFKRSKVKFDQFVEQGRILHNYASILELLLRLRQCCDHPFLVMSRGDTQEFSDLNKLAKRFLKGTHNASGGEAKDAPSRAYVQEVVEELQKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASWRNSTSGLCPVCRKTISRQDLLTAPTGSRFQIDIEKNWVESCKITVLLHELENLRSSGSKSIVFSQWTAFLDLLQIPFTRNNIPFVRLDGTLSQQQREKVIRQFSEDSDILVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKNVAIKRFIVKATRLEEFLHRLQGIWLGTSEARGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0377 1069 SMART ring_2 812 851 IPR001841 -
Sto12g0377 1069 MobiDBLite consensus disorder prediction 62 84 - -
Sto12g0377 1069 CDD DEXDc_SHPRH-like 365 678 - -
Sto12g0377 1069 Pfam SNF2-related domain 368 756 IPR000330 GO:0005524|GO:0140658
Sto12g0377 1069 SMART helicmild6 911 994 IPR001650 -
Sto12g0377 1069 MobiDBLite consensus disorder prediction 62 80 - -
Sto12g0377 1069 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 130 1069 - -
Sto12g0377 1069 MobiDBLite consensus disorder prediction 101 124 - -
Sto12g0377 1069 CDD SF2_C_SNF 878 1005 - -
Sto12g0377 1069 SMART ultradead3 361 659 IPR014001 -
Sto12g0377 1069 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 423 640 IPR014001 -
Sto12g0377 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 690 1063 IPR027417 -
Sto12g0377 1069 SUPERFAMILY RING/U-box 799 858 - -
Sto12g0377 1069 SMART HIRAN_2 133 245 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sto12g0377 1069 Pfam Zinc finger, C3HC4 type (RING finger) 809 857 - -
Sto12g0377 1069 Pfam Helicase conserved C-terminal domain 882 994 IPR001650 -
Sto12g0377 1069 Gene3D - 694 1069 IPR027417 -
Sto12g0377 1069 Gene3D - 420 469 IPR038718 -
Sto12g0377 1069 Gene3D - 485 679 IPR038718 -
Sto12g0377 1069 Pfam HIRAN domain 134 241 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sto12g0377 1069 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 775 870 IPR013083 -
Sto12g0377 1069 CDD RING-HC 812 851 - -
Sto12g0377 1069 ProSiteProfiles Zinc finger RING-type profile. 812 852 IPR001841 -
Sto12g0377 1069 ProSitePatterns Zinc finger RING-type signature. 827 836 IPR017907 -
Sto12g0377 1069 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 882 1040 IPR001650 -
Sto12g0377 1069 PANTHER DNA REPAIR PROTEIN RAD5 130 1069 - -
Sto12g0377 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 678 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0377 Sto-Chr12 2380427 2388178 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0377 5 1069 RAD5 or RAD16-like Gene Family AT5G22750 70.047 0.0 1523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto12g0377 SNF2_N 2.3e-89 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0377 K15505 - gmx:100794452 1592.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0377 12 2380427 2388178 Sto12g0377 12 2380427 2388178 ECH