Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0375 ATGGAACCTCCTGTCGTCAGATCGAGGGGTCGACCGAGAAAAAGGAGGAGAAAAGAGGACGAAAATGAGACAGATGATAGCAGATCGATTCCTGATTTGAAAAGGCAAGCTATCGGGACAAGACCAATAGCGCTGGTTGGACGATATGTACTTAAAGAGTTCAAGGGGAGTGGGGTTTTTATTGGTAAAGTTGTATATTACGAGTGTGGTTTATATAGAGTCAATTACGAGGATGGCGATTTTGAAGATTTAGATAGCAGTGAGATTCGTGGCATAATGCTCAACGACGGTGATTTTGATGGTGAGTTAACTCGGAGGAGGAATGAATTAGATGAATTTTTGCTGAAGAATAGTGCGAAGGCACGAGATAGTTCGGTGAAGAGTTCCGCAGACTTGAACACAGACGTCTGCGGGATTGATGCATCTCTATCAAGTGAATTACCTGGTGGGTTATCAATTGAACACGACAGTTTGGAAGTTGAAGGGGATACTGATTCGTCAAGTGACTCGTCTGCGGGCTTAAAGGAAAGGGATGTTGGGTCTGATGCCGAGACGCCTTCTCTACCTCAGCTGCAGCTTCCACCGTCTTCAGGAACTATTGGTGTGCCAGAGGCATACGTCTCTCATCTTTTTGCGGTGTATGGATTTTTACGATCATTCAGCATACGCTTGTTTTTAAGTCCGTTTTCTTTGGACGACTTTGTTGGTTGTCTTAACTGCCAAGTTCCAAACACTTTGTTTGATGCCATTCATGTTTCACTGATGCGTGCACTGAGGCGTCATCTTGAAACCCTTTCATCCGAGGGCTCAGAGCAGGCATCAAAATGCTTGAGGTGCAATGACTGGGGCTTGCTTGACACATTGACTTGGCCATTTTTTGTGATTCAGTATCTAGCAATTAATGGATATGCAAAAGGACCTGACTGGAAAGGATTTTATGATGAGATTTTTAATGGCGAGTATTATTTGTTACCTGTAAGTAGGAAATTGATTGTACTGCAAATTCTCTGTGATGTTGTTTTGGAGTCTGATGAACTGAAGGGTGAAATGAGCCATCGTGAAGACTTAGAAGTTGGGATTGAGTATGATGCAGAAGATATTCTTCCTGCAGAAAACTGGCCAAGAAGACTCCATGCAAGAGATGCCAATACCTCTGTTTGCAAGGATAAAGAAACTACAAGGTTCGTTCCAGAATCAAATGCTGTGAAGTTACCTGGTAACTATGTTTTAGATTTCAGGGACACTGTAAGGACTGAGGATGCTGATGTTGATAAAAATGGAGATGAATGTCGTCTCTGTGGCATGGATGGGACCTTGCTTTGTTGTGATGGGTGTCCATCTGCATATCACTCTAGGTGTATTGGAGTGATGAAAATGTTTATACCTGAAGGGCCATGGTATTGTCCAGAGTGCAAAATTAATATGAATGGCCCAACAATTGTGAAGGGAACGTCACTTAGAGGGGCTGAATTATTTGGAATTGATCTGTTTGGACAACTCTTCATGGGTACATGCAACCACTTACTCGTGCTCACTATCAACAGTGAACTTTGTCTTAGATATTACAACCAGAATGACATCTCAAAACTTCTCAAAGTTCTTTATGCATCAGTAGAGCATAGGCCTCTATACTATGGAATTTGTATGGCTGTGTTAAAATATTGGAATATTCCTGAAAGTGTCTTGCCTGTTTCTATTACATCTGGAAGTCCAATTCTTAGCGATTCTATGATTCCATCTTTTGAGGCCTCATTAGTTACCACTCCTAGAGATATTTGTGCTTCTGAAAGCAGTGGTGACAATAGAACTAAGGAGTGCATTAACGTGAATACTATGTTTCCCGAGGAAACAAGGATGGAGTCTGCGATCTCCGGTAGTCATGTTAATCATCAGCATGATCTCCCAGATATGACATACCAAAGTTCTGCTGATAGATCAATTGCAGTAACTCCTGCTAAGTGCACCTTGGTAAACAGTCGGGCGAATGCCAATGATAAGCAGTTGCCTATGAGTCTGTCCTTCCATATTAAAGATGGCAACCAATCTAGTTCTGTAAAAGTTGAATACAATTCAAATAAGGATTTTGTATACTCAGGTTTTGCTTATAAGCCTCAGTCATACATTAATCACTATATGCATGGTGATTTTGCAGCATCTGCTGCAGCTAAATTGGCCATTCTTTCTTCAGAGGATTCTAGGTCAGAGGGTCATGTGTCTGATAATTTGAGGAAAGTTACATCTGGAAGCACTTATTTGCAAGTAAAAGCTTTCTCTCAAGCTGCTTCACGTTTCTTTTGGCCAAGTTCTGAAAAGAAGCTGGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCCTTTCTTGTAAAGCTGCTGTCTCAAGCAAGAGAGGTTGCATGCTAAATCATGCTGCCCTAAGTGCTACCAAAAGTGCTCGCACCAGTCTTTCCATTGTAAGGAGTGGAGAGGGAATTCTACCTAGCATTGCGACATACATTATATACATGGAGGAAAGTTTACGTGGTTTAGTAGTTGGGCCCTTTCTAAGTGCAAATTACAGAAAGCAATGGCGTAAACGTGTGGAACAGGCTAAAACATTTAAAGCTGTAAAGCCCCTTTTACTTGAACTTGAGGAAAACATTCGCTTAATATCTTTTACCGGTGATTGGGTTAAGCTGATGGATGATTGGTTGGTTGAATCTTCTATGATTCAAAGTGCATCCAGTTCTGTTGGAACAGTCCAGACACGTGCATTAACTGGCAGGCGTTACAAGAAACAGTCAGCTATTGATGAAGTTACTGCTGATAGTTGCCATGAAAACAACATTGACTGGTGGTATGGTGGTAAATTCACCAAGTTTTTATTTCAGAAAGCAGTTTTGCCAAGATCTATGGTCAGAAAAGCAGCACGCCaagGTGGGTTGAGGAAAATTTCTGGTATTTTCTATGCCGATGTCTGTGAAATTCCTAAAAGAAGCAGGCAGATAGTTTGGAGAGCTGCAGTTCAAATGAGTAGGAATGCCTCACAGCTTGCACTTCAGGTCAGATACCTAGATTTTCATCTTAGATGGAATGATCTGATTTGTCCTGAGCAAAACCTCGTGGACAGTAAAGGTCAAGAGACTGAATCTTCTGCTTTTAGAAATGctaatatatgtgataagaaAGATGTGGAGGGAAAACTTTTGTATGGAATTGCTTTTGGTTCCCAAAAGCATCTTCCTTCTCGTATTATGAAAAATGTAATTGAAATAGAGGAGGGTCcagaaggaaaggaaaaatattGGTTTTCTGAAGCACGCATTCCTTTATACTTAGTGAAAGAGTATGAACAAGGTGTAGAAAAAGTGCCATCTCAtgaagagaacttgaatttagCATCTCAGCTGCAAAGGAAGCGATTGAAAGCTGCCTGCaaggatatatttttttacctcACTTGCAAGAGAGACAACTTGGATATATGCTTATGTTCTGTATGTCAGATGGATGTTTTAATTGGGAATGCTCTCAAGTGCAGTGCGTGTCAAGGTTATTGTCATCAAGGCTGTTGTATAAGTTCAGCATTCTCTACAAACAAGGAAGTTGAGTTCTTAACCACATGCAAGCAATGTTCAGCCAAATTGCTTGCTCAAAAAGAGACCAGTAAGGAATCTCCAACCAGTCCCTTACTCTTGCGAGGACAAGAACAAAACTCTGTGAATGTTTCGAAGGGATCAAGGCATAAGTGTTATGATCAAGCCTTGAAATCAACCAGGATCAAGGATACTTGTCCTGACACAAAACAAAGTAAATGTTATGATCAAGCCTCGAAATCAACCAGGATCAAAGATACTTGTCCTGACACAAAACAAAGTGCTTCTGATTCTACTTTACCAACAAAAAGCCGACGCAGGAATTGTTCTTGGGGTATTATATGGAAAAAGAAGAACACTGATGATACAGGCATTGATTTCAGGCTTAAAAACATACTTTTGAAAGGAGTTTCAGTAGAACATCAGTCAAAACCTAAATGTCGCTTGTGTCGGGAGCAGGAATATAGGTCTGATCTGATGTATATTTGCTGTGAGACCTGCGAAAATTGGTATCATGCTGATGCTGTTGAACTTGAAGAGTCAAAAATTTTGGATGTGTTGGGCTTCAAGTGTTGCAAGTGTCGCAGGATAAAATCTCCTGTGTGTCCTCACTCTGATCCGAAGGAGGCCACTAAGACTCACTCAGGAGCTTCAAGGAAGAAAGGTCGTTCTGGAAACAATTCTGAATTGAAAGAGTTGAAGGCTGCTACCCCCAGCTTTCCCGTTGGGGATGGGTTGAGACAAGACAATGGCCCTTTGCTTTCCTCTCTTTCAAGTGCTGAGCTGATAACAGAATCTAATAAAGTGGATGTTGAGAGGAATACTGTTTCTGGTCCAGGGCCTCAGAAACTCCCAGTGAGAAGACATGTTAAGCATGAAGGGGATGGTGATGATTCTTTTGGGAGTAAACTTTCACAGGCTGAATTTTTAACACAAAATGGAACAAATAATCTATCAGCTAGAGAGAAGTCATCATCTCCTCTGGAATATGACTCTGATGTTTGCCTGGACAGCAATGTGCTGAATGACTCCGGAAGTTTAAATTATGAATTCATGGAGTTTGAACCCCATACCTACTTCTCTGTAACGGAGTTGCTGCAGGCAGATGATAATCAGTTTGAGGGAGCTGATATGTCTGAGAACTTGACAGGATACCTGGAAAATTCTTGTACTATGAATGACATTCCTGAAGAATGTGGAGCTGTTAGTTTAGTGGATAAACCGGAACCTACAACTTATTGTTGCCAATGCTCACAGATGGAACCAGCCCCTGATCTCTCTTGTGAGATATGTGGGCTTTGGATTCACAGCCATTGTTCACCCTGGGTTGAATCACCTTCAAGGTTAGGAAGCTGGAGGTGTGGTAATTGTCGGGAATGGCAATAG 4956 0.41 MEPPVVRSRGRPRKRRRKEDENETDDSRSIPDLKRQAIGTRPIALVGRYVLKEFKGSGVFIGKVVYYECGLYRVNYEDGDFEDLDSSEIRGIMLNDGDFDGELTRRRNELDEFLLKNSAKARDSSVKSSADLNTDVCGIDASLSSELPGGLSIEHDSLEVEGDTDSSSDSSAGLKERDVGSDAETPSLPQLQLPPSSGTIGVPEAYVSHLFAVYGFLRSFSIRLFLSPFSLDDFVGCLNCQVPNTLFDAIHVSLMRALRRHLETLSSEGSEQASKCLRCNDWGLLDTLTWPFFVIQYLAINGYAKGPDWKGFYDEIFNGEYYLLPVSRKLIVLQILCDVVLESDELKGEMSHREDLEVGIEYDAEDILPAENWPRRLHARDANTSVCKDKETTRFVPESNAVKLPGNYVLDFRDTVRTEDADVDKNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVMKMFIPEGPWYCPECKINMNGPTIVKGTSLRGAELFGIDLFGQLFMGTCNHLLVLTINSELCLRYYNQNDISKLLKVLYASVEHRPLYYGICMAVLKYWNIPESVLPVSITSGSPILSDSMIPSFEASLVTTPRDICASESSGDNRTKECINVNTMFPEETRMESAISGSHVNHQHDLPDMTYQSSADRSIAVTPAKCTLVNSRANANDKQLPMSLSFHIKDGNQSSSVKVEYNSNKDFVYSGFAYKPQSYINHYMHGDFAASAAAKLAILSSEDSRSEGHVSDNLRKVTSGSTYLQVKAFSQAASRFFWPSSEKKLVEVPRERCGWCLSCKAAVSSKRGCMLNHAALSATKSARTSLSIVRSGEGILPSIATYIIYMEESLRGLVVGPFLSANYRKQWRKRVEQAKTFKAVKPLLLELEENIRLISFTGDWVKLMDDWLVESSMIQSASSSVGTVQTRALTGRRYKKQSAIDEVTADSCHENNIDWWYGGKFTKFLFQKAVLPRSMVRKAARQGGLRKISGIFYADVCEIPKRSRQIVWRAAVQMSRNASQLALQVRYLDFHLRWNDLICPEQNLVDSKGQETESSAFRNANICDKKDVEGKLLYGIAFGSQKHLPSRIMKNVIEIEEGPEGKEKYWFSEARIPLYLVKEYEQGVEKVPSHEENLNLASQLQRKRLKAACKDIFFYLTCKRDNLDICLCSVCQMDVLIGNALKCSACQGYCHQGCCISSAFSTNKEVEFLTTCKQCSAKLLAQKETSKESPTSPLLLRGQEQNSVNVSKGSRHKCYDQALKSTRIKDTCPDTKQSKCYDQASKSTRIKDTCPDTKQSASDSTLPTKSRRRNCSWGIIWKKKNTDDTGIDFRLKNILLKGVSVEHQSKPKCRLCREQEYRSDLMYICCETCENWYHADAVELEESKILDVLGFKCCKCRRIKSPVCPHSDPKEATKTHSGASRKKGRSGNNSELKELKAATPSFPVGDGLRQDNGPLLSSLSSAELITESNKVDVERNTVSGPGPQKLPVRRHVKHEGDGDDSFGSKLSQAEFLTQNGTNNLSAREKSSSPLEYDSDVCLDSNVLNDSGSLNYEFMEFEPHTYFSVTELLQADDNQFEGADMSENLTGYLENSCTMNDIPEECGAVSLVDKPEPTTYCCQCSQMEPAPDLSCEICGLWIHSHCSPWVESPSRLGSWRCGNCREWQ 1651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0375 1651 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 308 350 IPR028942 -
Sto12g0375 1651 Pfam PHD-finger 430 472 IPR019787 -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 158 195 - -
Sto12g0375 1651 SMART testlast3 204 264 IPR018501 -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 1 33 - -
Sto12g0375 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1330 1392 IPR013083 -
Sto12g0375 1651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 420 477 IPR013083 -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 1458 1492 - -
Sto12g0375 1651 ProSitePatterns Zinc finger PHD-type signature. 430 471 IPR019786 -
Sto12g0375 1651 PANTHER PHD FINGER FAMILY PROTEIN 1262 1648 - -
Sto12g0375 1651 PANTHER PHD FINGER FAMILY PROTEIN 1 1261 - -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 1393 1438 - -
Sto12g0375 1651 ProSiteProfiles DDT domain profile. 204 264 IPR018501 -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 1278 1294 - -
Sto12g0375 1651 ProSiteProfiles Zinc finger PHD-type profile. 427 474 IPR019787 -
Sto12g0375 1651 SUPERFAMILY FYVE/PHD zinc finger 1596 1649 IPR011011 -
Sto12g0375 1651 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1 1261 - -
Sto12g0375 1651 PANTHER DNA-BINDING AND ZINC-FINGER PROTEIN 1262 1648 - -
Sto12g0375 1651 SUPERFAMILY FYVE/PHD zinc finger 401 473 IPR011011 -
Sto12g0375 1651 SUPERFAMILY FYVE/PHD zinc finger 1330 1390 IPR011011 -
Sto12g0375 1651 CDD PHD_SF 1603 1647 - -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 1214 1236 - -
Sto12g0375 1651 CDD PHD_TCF19_like 1337 1384 - -
Sto12g0375 1651 Pfam DDT domain 207 261 IPR018501 -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 1274 1294 - -
Sto12g0375 1651 SMART PHD_3 1336 1385 IPR001965 -
Sto12g0375 1651 SMART PHD_3 429 472 IPR001965 -
Sto12g0375 1651 SMART PHD_3 1155 1204 IPR001965 -
Sto12g0375 1651 SMART PHD_3 1603 1648 IPR001965 -
Sto12g0375 1651 MobiDBLite consensus disorder prediction 15 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0375 Sto-Chr12 2369689 2376686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0375 19 1651 PHD Transcription Factor Family AT5G35210 42.533 0.0 1153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sto12g0375 DDT 6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0375 - - lang:109351702 1964.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0375 12 2369689 2376686 Sto12g0375 12 2369689 2376686 ECH