Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0360 ATGGCTATTGTTAGTCTGCACAATGTATCTGTGCTTGACTCTTCTTTTTTTAGGGAATCCCATTCTCAGTCATCCAGAAGGAGACCAGGAGATGGAGGGAGGGGAGGCACCCGGTCATCTTCACTCTTGCAAATGTGGCAAGACATTGAGGATGAGCATGTGGAATTAAAAAGTTCTAGTGGTGAAAACTCTCCTGATCTTGGAGAAGTTGAAAGGGAAAGAGTGAGGCAAATTTTCAGGGAATGGATGAACAGTGGTGCTAGGGATCATGCATCAAACATTTCCCCAAGAAGTAACGGTTCTAGGGCAGAATGGCTTGGTGAAACTGAGCAGGAGAGGGTGAGAGTTATAAGGGAGTGGGTACAAATGAGTAGCCAGCAGAGCGGTCTTTTATCTGGGGACAATAGAGAAGAACAATCTGCTGAAATTGGTACCCAGATTGAGCGTGTACGTGATGGTTTTGTCGTTAATAAGAATGAGGGCCAAATTGATCATTCTCGTAGAGGGATTCGTAAATTATGTGGCAGACAGGTTCTGCTTGATATGCTTAAGAAGGCTGAAAGGGAGAGGCAGAGAGAAGTTCAGGAGTTGTGGGACAATCATGCGGTATCTCATTTTCCCCATCGTAATCGCATTCAGGCATTGCTTAGAGGCAGGTTTTTGAGAAACGATAGAGCTTATGAGAATAACAGGTCCACTTCTGTCGCAGAGAGTGAATTAGGCTTATTGAGGCAAAAGCAAACTGTATCGGGTTTAAGGGAAGGCTTCTTTTCTGGAAAGGACATTTCTGGTTGCAGTTTAGTAACCAGCAATTTAACCGATACCTCATCAAACAGTGATATTGATGCTGATACAAATCAACAAACTGAACCCAGTAGTTCACAAGAGCCTAATTATAGAGGAACTAATAGAATTGAGATATCAGGTGGTCAGAATTGTTTGCTGGAACCTGCTGTTGAGAAATTAGATTGGCAAGACTCTTCTGCTCATATTGAAGAACAAAGGCTACACCTTTTGGAATTTGAATCAAAAAATTTGAAATCATTACCTAGTGCTGAGATTGATAGAAGAGATGGCACTGGACAAAGTGTTGATGTGATGTCAACTGAAGTAACTACTAATGGACTTACCCAGCCAGGTTTGCAAATTGAAGATACAGAGCATAGCAATTTGCAGGAATTCAATGAGGAGTATAATGATGAGCAATCTGAGCTTGGTGTTACAATTAATGATGGAAATGGTTTGTCAAATAATGCTCTGCCAGAGCAGCCAGTAGGTTTTGCAAATGACGGAAGTGACTGGCTTCCAACTAATGTTGAACGGAGAAATAGCTCATGGGAAAGAATGGATGTTAACCATACGACTATGACGTCAAATGAGTGGCCCCAAATCATCTTGGAGAATGAAGATCGGGAGAACTTTCATGTGGTAGAAGTACCTGAAATGGGGCAAGAAGATGATGGCCTTCAAGCGGCTGTGGAAAATTGGTTGAGAGGACCTTCTGATGAAGAAGGTGCTCCAGTTAGTAGAACTCATCAAATTTGTTTTCCTTATGATGACAATATGCATAGTGAGGAACTCACAGAGCTGTTGAGTAGGCGACGTGTTTCTAATCTCCTTAGCAGCAGTTTCCGTCAGAATCTTGATCGGTTGATACAATCATATGTTGAAAGGCAAGAACATGCTCAGATTGAGTGGGAGCTGCAAGAATTTGGTCACTCTGACTCAGTAGAAGATGACCTGGAGCAGCAGTCTTGGGATCAGATCAGTGGTGGTGAGGAGGGTGCAGCTGAGACTGCTGTTCAAATGCCATCATCACCAACACCTTCTCAGCCTCTTTGGGACCAGCAGTTACATCACGACAACTGGCCACAGAGTGAAGGGTGGGAGATTATTAATGGCTTGAGGATTGACATTGCTGTACTTCAGCAGAGGATGAATAGTATGCAGAGGATGCTGGAGGCCTGTATGGATTTGCAGCTTGAGTTGCAGCGGTCAATAAAGCAAGAAGTTTCTGCAGCGCTTAATTCCTCATCTGATTCATCATCAGGACTGCAAGACCATGATTCGCCAGATGATAAATCTAAATGGGATTATGTGAGAAAAGGACTTTGCTGTATATGCTGTGAGAGTAATATTGATTCTTTATTGTACAGATGTGGGCACATGTGTACATGTTTAAAATGTGCGAACGAGTTGCTACAAAGCAAAAGAAAGTGTCCTATGTGTCAAGCACCTGTGATGGAGGCGATACATGCTTATTCCATACTGTAA 2274 0.4283 MAIVSLHNVSVLDSSFFRESHSQSSRRRPGDGGRGGTRSSSLLQMWQDIEDEHVELKSSSGENSPDLGEVERERVRQIFREWMNSGARDHASNISPRSNGSRAEWLGETEQERVRVIREWVQMSSQQSGLLSGDNREEQSAEIGTQIERVRDGFVVNKNEGQIDHSRRGIRKLCGRQVLLDMLKKAERERQREVQELWDNHAVSHFPHRNRIQALLRGRFLRNDRAYENNRSTSVAESELGLLRQKQTVSGLREGFFSGKDISGCSLVTSNLTDTSSNSDIDADTNQQTEPSSSQEPNYRGTNRIEISGGQNCLLEPAVEKLDWQDSSAHIEEQRLHLLEFESKNLKSLPSAEIDRRDGTGQSVDVMSTEVTTNGLTQPGLQIEDTEHSNLQEFNEEYNDEQSELGVTINDGNGLSNNALPEQPVGFANDGSDWLPTNVERRNSSWERMDVNHTTMTSNEWPQIILENEDRENFHVVEVPEMGQEDDGLQAAVENWLRGPSDEEGAPVSRTHQICFPYDDNMHSEELTELLSRRRVSNLLSSSFRQNLDRLIQSYVERQEHAQIEWELQEFGHSDSVEDDLEQQSWDQISGGEEGAAETAVQMPSSPTPSQPLWDQQLHHDNWPQSEGWEIINGLRIDIAVLQQRMNSMQRMLEACMDLQLELQRSIKQEVSAALNSSSDSSSGLQDHDSPDDKSKWDYVRKGLCCICCESNIDSLLYRCGHMCTCLKCANELLQSKRKCPMCQAPVMEAIHAYSIL 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0360 757 Coils Coil 632 652 - -
Sto12g0360 757 MobiDBLite consensus disorder prediction 590 613 - -
Sto12g0360 757 Pfam Zinc finger, C3HC4 type (RING finger) 702 748 - -
Sto12g0360 757 Coils Coil 176 196 - -
Sto12g0360 757 MobiDBLite consensus disorder prediction 273 305 - -
Sto12g0360 757 CDD mRING-HC-C3HC5_NEU1 705 743 - -
Sto12g0360 757 PANTHER PROTEIN, PUTATIVE-RELATED 1 54 - -
Sto12g0360 757 PANTHER PROTEIN, PUTATIVE-RELATED 55 756 - -
Sto12g0360 757 MobiDBLite consensus disorder prediction 17 39 - -
Sto12g0360 757 SUPERFAMILY RING/U-box 704 750 - -
Sto12g0360 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 755 IPR013083 -
Sto12g0360 757 ProSiteProfiles Zinc finger RING-type profile. 705 744 IPR001841 -
Sto12g0360 757 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 55 756 - -
Sto12g0360 757 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0360 Sto-Chr12 2255247 2259466 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0360 - - gmx:100801329 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0865 7 6603034 6606809 Sto12g0360 12 2255247 2259466 CCT
Sto12g0360 12 2255247 2259466 Sto12g0360 12 2255247 2259466 ECH
Sto12g0360 12 2255247 2259466 Sto7g0865 7 6603034 6606809 ECH