Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0356 atGGATATGGAAGGCACAGAGGAGGTTGTGGGCTCCACCCACGTCGTAGCAAAGGGCAAGCGCACCAAACGTCACAGGCCCTTCCCTTCCTCCACCCTCGCCAATTCTACCTCCTCCTCTGCTTCTGCCGATGATCATGTCTCCTCCAATTCCTCTACCACTTATGAGGAGGACCAAGACATGGCTAATTGCTTGATTCTCTTGGCTCAGGGTGCTGCCGATCCTCCTCCTACCATGGATCTTTATGAATGCAAAACTTGTAACAGAACCTTCCCTTCCTTTCAAGCCCTTGGAGGCCACAGGGCTAGCCACAAGAAGCCTAAGCTTGATGACAAGAAACCCCCCTCTCCATCTCCGCCCCCACAAGTTGAAGATGCAGGGGAAGCCCAATTCAAAATCACGCCTCCCATTTCTCTTCAATTACCAACTCATAACATTAATAAGCCTTCTCCTACTCCCACCAACAAGGCCAAGATTCACGAGTGTTCCATATGTGGCTCCGAATTTACATCTGGCCAAGCATTGGGTGGCCATATGAGGAGGCACAGAGCATCAACCACAACCAACGCCGCCCCCCTCCAAGTCAAGCCCAGGAATGTTCTAGAATTGGACCTTAACTTGCCGGCGCCGGAGGACGATCTCCGGGATTCCAAGTTTCAGTTTACGCCCTCGCACAAGCCTCTGGTGCTGTCTGCTCCGGCTTTGTTGTTGTTCAAGTTGGAATACTTTGAGTAA 735 0.5156 MDMEGTEEVVGSTHVVAKGKRTKRHRPFPSSTLANSTSSSASADDHVSSNSSTTYEEDQDMANCLILLAQGAADPPPTMDLYECKTCNRTFPSFQALGGHRASHKKPKLDDKKPPSPSPPPQVEDAGEAQFKITPPISLQLPTHNINKPSPTPTNKAKIHECSICGSEFTSGQALGGHMRRHRASTTTNAAPLQVKPRNVLELDLNLPAPEDDLRDSKFQFTPSHKPLVLSAPALLLFKLEYFE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0356 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Sto12g0356 244 MobiDBLite consensus disorder prediction 28 56 - -
Sto12g0356 244 SUPERFAMILY beta-beta-alpha zinc fingers 81 182 IPR036236 -
Sto12g0356 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Sto12g0356 244 MobiDBLite consensus disorder prediction 1 56 - -
Sto12g0356 244 MobiDBLite consensus disorder prediction 95 156 - -
Sto12g0356 244 Pfam C2H2-type zinc finger 160 184 - -
Sto12g0356 244 Pfam C2H2-type zinc finger 82 107 - -
Sto12g0356 244 Gene3D Classic Zinc Finger 79 182 - -
Sto12g0356 244 SMART c2h2final6 82 104 IPR013087 -
Sto12g0356 244 SMART c2h2final6 160 182 IPR013087 -
Sto12g0356 244 MobiDBLite consensus disorder prediction 136 156 - -
Sto12g0356 244 PANTHER ZINC FINGER PROTEIN ZAT5 81 235 - -
Sto12g0356 244 PANTHER ZINC FINGER PROTEIN ZAT5 1 77 - -
Sto12g0356 244 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Sto12g0356 244 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Sto12g0356 244 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 77 - -
Sto12g0356 244 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 81 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0356 Sto-Chr12 2218713 2219634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0356 3 236 C2H2 Transcription Factor Family AT2G28200 41.892 1.58e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0356 zf-C2H2_6 1.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0356 - - gmx:100794834 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0875 7 6670326 6671306 Sto12g0356 12 2218713 2219634 CCT
Sto12g0356 12 2218713 2219634 Sto12g0356 12 2218713 2219634 ECH
Sto12g0356 12 2218713 2219634 Sto7g0875 7 6670326 6671306 ECH