Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0355 ATGGATTTCCAAACTAACTCCCTCCCTTCGTCTCTTTCTCAACCTTCAGCTTCCTCTGACTTGGGATTTGGGAATTTCGGGTGCTCACATTACAGAAGGAGATGCAAGATTAGAGCACCTTGTTGCAATGCCATCTTTGACTGTCGCCATTGCCACAATGAAGCTAAGAACTCCCAAGAATTGAACCCTATCGATCGTCATGATATTCCCCGCCATCAAATTAAAAAGGTCATCTGTTCCTTATGTGACACAGAGCAAGATGTTCAACAGTATTGCATAAACTGTGGAGTGTGCATGGGCAAGTACTTCTGTGCTACTTGCAAATTCTTCGATGATGATATTTCGAAGAACCAATACCACTGTGATGAATGTGGCATCTGTAGAACTGGAGGAAAGGATAACTTTTTCCACTGCAAGAGATGTGGATGTTGCTACTCTAAGGTAATGAAAGATGGGCATCGATGTGTGGAAGGAGCAATGCATCATAATTGCCCTGTTTGTATTGAGTACTTATTTGATACCCTCAGAGACATCACTGTCTTGCCTTGCGGTCATACTATACATTTGGAATGTGTAAAAGAGATGGAGCAGCATTACAGGTATTCATGTCCTGTTTGTTCCAAATCCATCTGTGACATGTCAAATCTGTGGAAGAAGCTTGACCAAGTGATTGCCTCAACACCAATGCCTGAAACATACAAAGACAAGATGGTATGGATACTGTGCAATGATTGTGGAGTGAACTCTCAAGTGCAATTTCACATAGTGGGGCATAAGTGCCAGAGTTGCAAGTCATACAACACAAGACAGATACAAGGAAGCCCTTCTACCTCATGCTCTTCTGCAGTCACTGAGATGGTGAGATGA 867 0.4268 MDFQTNSLPSSLSQPSASSDLGFGNFGCSHYRRRCKIRAPCCNAIFDCRHCHNEAKNSQELNPIDRHDIPRHQIKKVICSLCDTEQDVQQYCINCGVCMGKYFCATCKFFDDDISKNQYHCDECGICRTGGKDNFFHCKRCGCCYSKVMKDGHRCVEGAMHHNCPVCIEYLFDTLRDITVLPCGHTIHLECVKEMEQHYRYSCPVCSKSICDMSNLWKKLDQVIASTPMPETYKDKMVWILCNDCGVNSQVQFHIVGHKCQSCKSYNTRQIQGSPSTSCSSAVTEMVR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0355 288 Pfam Ring finger domain 163 206 IPR001841 -
Sto12g0355 288 ProSiteProfiles Zinc finger RING-type profile. 164 207 IPR001841 -
Sto12g0355 288 SUPERFAMILY Zinc hairpin stack 100 157 IPR037275 -
Sto12g0355 288 SUPERFAMILY RING/U-box 162 212 - -
Sto12g0355 288 ProSiteProfiles Zinc finger CHY-type profile. 21 97 IPR008913 GO:0008270
Sto12g0355 288 SMART ring_2 164 206 IPR001841 -
Sto12g0355 288 Pfam Zinc-ribbon 211 269 IPR039512 -
Sto12g0355 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 236 IPR013083 -
Sto12g0355 288 Gene3D - 237 277 - -
Sto12g0355 288 SUPERFAMILY CHY zinc finger-like 25 99 IPR037274 GO:0008270
Sto12g0355 288 Pfam CHY zinc finger 28 109 IPR008913 GO:0008270
Sto12g0355 288 ProSiteProfiles Zinc finger CTCHY-type profile. 99 163 IPR017921 -
Sto12g0355 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 14 286 - -
Sto12g0355 288 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 14 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0355 Sto-Chr12 2205803 2207988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0355 26 273 C2H2 Transcription Factor Family AT3G18290 39.300 1.16e-53 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0355 K10144 - gmx:100812709 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0355 12 2205803 2207988 Sto12g0355 12 2205803 2207988 ECH