Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0341 ATGGGAAGAGCTCCTTGTTGTGACAAAGCGAATGTGAAGAAGGGTCCATGGTCACCGGAAGAAGACTCCAAGCTCAAAGACTACATAGAGAAGAATGGGACAGGAGGCAATTGGATTGCTCTTCCCCAGAAAGCAGGTTTGAAGAGGTGCGGGAAAAGTTGCAGATTGAGGTGGCTCAACTATCTCAGGCCAAACATCAAGCATGGGGAATTTTCCGATGAGGAAGACAGAATCATATGCAGCCTCTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGGTCAGTTGCCAGGCAGGACCGACAATGATATAAAGAACTACTGGAACACCAAGCTGAAGAAGAAGCTGATGGACGCCTCCTTGATGACGAATATGCAATACTACTACAATATGTTTGCAAGTGAAGCAAGTTGCAGCACTTCATCTGATGGAAGCTGTGGTCCAGCTCAGAATCAGATAAGTATAAGTAGCAGCAGCAGCAGAGACATGAAGCAACAAGAAATGGGGTTTCATCACCAAAACTATGTGGGCCCTAATAATGGTGGGCTTGAATTGGAGTTCTGCAATGTTCCTGGGTCTGCTGGCTGTGAGAACATGATGAACTACAACCAGAACTGGACAGCAGCAGAGAAAGGAAGTGGGTATTTTGGACAAACTCCAATAATGGATTATGGTATTGAGGAAATCAAGCAGCTGATTAGTAGTAATAATGGGATGTTTAATaatgaagagaagagagaggagAAGGGGATGATGTACTACTACTACTGA 774 0.4315 MGRAPCCDKANVKKGPWSPEEDSKLKDYIEKNGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAGQLPGRTDNDIKNYWNTKLKKKLMDASLMTNMQYYYNMFASEASCSTSSDGSCGPAQNQISISSSSSRDMKQQEMGFHHQNYVGPNNGGLELEFCNVPGSAGCENMMNYNQNWTAAEKGSGYFGQTPIMDYGIEEIKQLISSNNGMFNNEEKREEKGMMYYYY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0341 257 PANTHER OS09G0431300 PROTEIN 1 170 - -
Sto12g0341 257 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sto12g0341 257 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Sto12g0341 257 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Sto12g0341 257 CDD SANT 16 62 IPR001005 -
Sto12g0341 257 SMART sant 67 115 IPR001005 -
Sto12g0341 257 SMART sant 13 64 IPR001005 -
Sto12g0341 257 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Sto12g0341 257 PANTHER MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED 1 170 - -
Sto12g0341 257 Gene3D - 69 131 - -
Sto12g0341 257 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sto12g0341 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Sto12g0341 257 CDD SANT 70 113 IPR001005 -
Sto12g0341 257 Gene3D - 7 68 - -
Sto12g0341 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0341 Sto-Chr12 2128187 2129829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0341 1 127 MYB Transcription Factor Family AT5G57620 85.827 1.73e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0341 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0341 K09422 - qsu:112032137 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0889 7 6823226 6824945 Sto12g0341 12 2128187 2129829 CCT
Sto12g0341 12 2128187 2129829 Sto12g0341 12 2128187 2129829 ECH