Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0339 ATGCAGAGATCTGGGTATGGACGTGATGGAATATACAGGTCTCTCAGGCCCTCCCTTCATCTCCCAAATCAACACAATCTCTCTATGGTTTCATTTCTCTTCAGAAACCTATCTTCTTTCCCCAATCAACCCGCCTTGATCGATGCGCATTCCTCCCAAACTCTCTCTTTCTCCCACTTCAACTCCCTCACTCTCAAACTCTCCCATGCTCTTCTCCGTCTAGGAATCAACAAAAACGACGTCGTCCTCCTTTTTGCACCCAACTCTATCTTCTACCCTGTTTGCTTCCTCGCCATCACCGCCATTGGCGCCGTCGCCTCCACCGCCAACCCTATTTACACTGTTTCAGAGCTTTCCAAGCAACTCAAAGATTCCAACCCCAAGCTCCTCATCACCGTCTCTGAGTTATGGCACAAAGTGAAGGGTTTCAATCTCCCCCTTGTATTCTTGGATTCTCAGGATTCTCAAACTCCTTCCCCTATCGCATCCACTTCCAAGATTACGACCTTCGATGGGTTAGTGGACCTCGCTGGATCCCCAACCCAATTTCCGGATTGTAATGTTAAGCAGAGCGATACGGCGGCACTTCTGTATTCTTCGGGCACAACGGGTGTGAGTAAGGGCGTGATCCTCACCCATAAGAATTTCATAGCAGCGGCCCTTATGGTGGGCATGGATGACGAATTGGCTGGCCTCACGCACGATGTCTTTATCTGCGTTGTCCCAATGTTTCATGTTTTCGGGCTGGCAGTCATTTTGTACTCGCAGCTTCAGAGAGGCAATGCCGTGGTGTCTATGACCAAATTCGATTTCCAAATCATGTTAAGGGCAATTGAAAAATATAGAGTGACTCGTTTGTGGGTTGTGCCTCCGATTATCCTTGCTCTGGCAAAGCAGAGCGTGGTTAAGAAGTATGATCTTTCCTCATTGACGCAAATTGGTTCCGGTGCTGCTCCTCTAGGCAAAGAATTGATGGAGGAGTGTGCCAAAAGTTTCCCTCATGCTCTTGTTATTCAGGGCTATGGTATGACAGAAACTTGTACCGTTGTATCTTTGGAGAATGAAAGAATAGGCACTCGTCATAGTGGTTCAGCGGGAATGCTTATTTCAGGAGTTGAGGCTCAAATAATCAGTGTGGATACGCTGAAGCCCCTTCCTCCTCGTCAGTTGGGTGAGATATGGGTTCGGGGTCCTAATATGATGCAAGGTTATTACAATAATCCACAGGCCACCAGATTGACTATAGATAAAATGGGATGGGTACATACAGGAGATCTTGGATACTTTGATGAGGATGGGCAACTTTATGTTGTTGACCGTATCAAAGAACTCATCAAGTATAAAGGTTTTCAGGTTGCACCAGCAGAACTTGAAGGACTTCTTGTTTCTCACCCTGAACTAGTAGATGCTGTTGTCATTCCACTTCCTGATGCTGAGGCTGGTGAGGTTCCAGTTGCCTATGTTGTTCGTTCACCCACAAGCTCACTCACTGAAGAAGATGTTCAGAAGTTTATTGCTAATCAGGTTGCACCTTACAAAAGATTGCGAAGGGTGACATTCATCAACGCCGTTCCAAAGACAGCTTCTGGAAAACTTCTCAGAAGAGAGCTTATTGAGAAAGCACGAtccaaaatataa 1638 0.4621 MQRSGYGRDGIYRSLRPSLHLPNQHNLSMVSFLFRNLSSFPNQPALIDAHSSQTLSFSHFNSLTLKLSHALLRLGINKNDVVLLFAPNSIFYPVCFLAITAIGAVASTANPIYTVSELSKQLKDSNPKLLITVSELWHKVKGFNLPLVFLDSQDSQTPSPIASTSKITTFDGLVDLAGSPTQFPDCNVKQSDTAALLYSSGTTGVSKGVILTHKNFIAAALMVGMDDELAGLTHDVFICVVPMFHVFGLAVILYSQLQRGNAVVSMTKFDFQIMLRAIEKYRVTRLWVVPPIILALAKQSVVKKYDLSSLTQIGSGAAPLGKELMEECAKSFPHALVIQGYGMTETCTVVSLENERIGTRHSGSAGMLISGVEAQIISVDTLKPLPPRQLGEIWVRGPNMMQGYYNNPQATRLTIDKMGWVHTGDLGYFDEDGQLYVVDRIKELIKYKGFQVAPAELEGLLVSHPELVDAVVIPLPDAEAGEVPVAYVVRSPTSSLTEEDVQKFIANQVAPYKRLRRVTFINAVPKTASGKLLRRELIEKARSKI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0339 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 4 544 - -
Sto12g0339 545 Gene3D - 443 544 IPR045851 -
Sto12g0339 545 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 4 544 - -
Sto12g0339 545 Gene3D - 9 442 IPR042099 -
Sto12g0339 545 CDD 4CL 21 537 - -
Sto12g0339 545 SUPERFAMILY Acetyl-CoA synthetase-like 21 543 - -
Sto12g0339 545 Pfam AMP-binding enzyme 35 447 IPR000873 -
Sto12g0339 545 Pfam AMP-binding enzyme C-terminal domain 456 531 IPR025110 -
Sto12g0339 545 ProSitePatterns Putative AMP-binding domain signature. 196 207 IPR020845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0339 Sto-Chr12 2112069 2119346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0339 1 545 Monolignol Biosynthesis Gene Families AT4G05160 67.523 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0339 K01904 - rcu:8275217 835.099
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0339 12 2112069 2119346 Sto12g0339 12 2112069 2119346 ECH