Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0319 ATGGCAAATACTACAAGTTCCAGCCGTAGGGTTAAGGTTGATGAAAATAACAATAGGAGATGTGTCAGTGAGATGGGCCCAACAAACTCATCTTCTCCTGTATCAGATGCTGCTGGTCTCAGAAGATCTGCTAGAGAAACTTTGTCTAAGAAGACAACTCCTAGTCCTTTGCCAAGTCCTCAAAAGTCTGAGCAACTGGGAAAGCGGAAATCACTAAGTCCTGTAGTCCGAAGGAAATCCGAAAGGTTTGAGAAAAAGAATATTCCAAGTCCTTTGAGGAGATCTAAAAGAACTATGAACAACTCGACTTTAGCTTCTCTGGATGTAAAGAGTATGGGCTCATCAATTTCAAAGCAGAAGAAGCTAAAGAAACAGAAGAGTGTAAAACAGTTAACTTTTGAAGCTAAGGGAGTCAGTGAAAATGAAGAACTTGATGCTGAAGCTTCTCCGGTAAAAAACAAGAGAATGAATGCTCGTGAATACCGGGCTATGCTAAAGAAAAAACCAAAGATAGATGGTCATGAGGAGTCAAATAGGAGAAATAATTTAGTTCAAGAAGGTGGCAACAATAAAGAAGGCAAGATTGCTGAGTGCTTGAAAGGCAGTTATTTAGATTGTAAAGAAGTCTACAAGAATCTACCATCTGAAAATGCCAAGGAGTCGATTAACCTGTCTGCTAAAGAGGATAGAGGTGAAATTGAAGTCGGCATCACATCAAAAATGcctgataaagaaaaagaaacctctGCAAAGATCTCAACAGATGATGAACAAATATGTCTCATTTGCAAGTGTGGTGGGCAGCTCCTGTTCTGCAATGGAAAGGGATGCAATAGTTGCTACCATATTTCTTGTCTTGAACCTCCCATGGTGGATGCTCGCCTTGGAGTTTGGCATTGTCATCTCTGCTTGAGGAAGAAGATACAATTGGGTGTATATTCTGTGTCTGAGGGAGTAGAATCAATTTGTGATACCAGAGAGGTTGAGGTCTCCAATCTTGATGGATTGTCGACAATTGAGAAGCAATTTTTGGTGAAGTATAAAGGCCTTGCTTATGTTCATTGTCGTTGGGTCCCAGAAAGTCAATTACTTCTTGAAGCTCCATTGCTGCTTAAGGAATTTAATCAGCAAGATCAGAGAGTTTCATCACTTCAAGTCCTAAGGTGGAAGCCAGAATGGAGCTTACCCCATCGTTTGCTTCATAAGAGAGCATCAATCTCTACCAAACAGCATGGTGATCCCATGAGTGGCCAAGCTGTTGACAATTTTGACTGTCATTACGAATGGCTTGTGAAATGGCGTGGTCTTGGTTATGAACATGCATCATGGGAGTTGGATAATGCTTCATTTCTAAATTCACCTGAAGGTCAGAGGCTAATTAAAGACTATGAAGATCGTCATCAGAGGGCAAAGAGTGTTACTTTAAACTCCAAGAATGTAGATCGGGTTAGTTCTCTTAGTAAATTATCTCAGATGCCTGGTGGAATTTCTCCTGGATATGGTAACAACAATTTAGATGCAGTTAACAAGCTACGTGAGCATTGGCAAAAGGGTCAGAATGCTATCATAATTGATGACCATGATAGAATAGTGAAAGTGGTTGCATTCGTTTTATCATTGCACAATGATACTTATCGACCTTTCCTCATTATCTCAACTACTGCTGCTCTCCAGTATTGGGAGGATGAGTTTTCCCGATGGGCATCATCTGTCAATGTCATTGTTTACAGTGGAAACAAAGAGATTCGTAGAAGTATTAGGAAACTAGAATTTTGGGACGATGCGGGTTGTCTGCTTTTCCGAGTACTCATAGTACTTCCAGATATCATTATTGAGGATCTAGATGTCTTTGGAGGCATAGCATGGGAAGCAATCATAGTTGATGAGTGCTCTAAGATCTCATCTTCTTTGAAACAAACTAAAATGTTAAATGCAGATTTGAGGATTCTTCTTCTCAGTGGACAACTGaagGATAatattatagaatataataatattctGGCCCTTCTTGATTGTCAACATTGCAGTGAAGACAATGAAGAGTTAATATGTAATTCTAGTGACCGTATTGGTGTATTGAAGGATAAGCTATCAAGTTATGTTGCATATAGATGCAAATCGGATTTCTCTAGGTTTGTTGAGTATTGGATTCCTGTAAAGATATCAAATGTGCAGCTTGAGTTGTATTGCGCCACTTTACTTTCAAACTCTTCAACACTTCGTTCTTCATCGTGCAAAAGTGCTCTTGTTGAGGCCCTTCGTGACattcttattactacccggaagTCTATAGGTGGCTTTGGGAAGGTTTCAATAGGAGATATTTTGGATGACTTTATGCGTCAAAGATTTGGTCCAGATTCCTATGAACGGGTTGACAAATATGTTGTGCATTCTAAGAAGCAAAATGCTCTGAAGATGTTCAATAACAAGGACCATGGAcgatttgtatttttattagaaaCAAATGCTTGCCTTCCTAGCATCAAATTGTCATCAGTTGATACTATCATCATTTTTGATAGTGATTGGAACCCATTGAATGATATAAGATCCCTTCAAAGAATAACACTTGATTCAAAGTTGGAACGGATTAAAATATTTCGTTTATATTCATCTTTCACTGTTGAAGAAAGAGCCCTAATCCTTGCCAAGCAAGATAAGCCACTTGATAGCAATTTGCAAAACATAAGTTGGAGTATTAGTCATATGCTGTTGATGTGGGGGGCATCTTGGCTATTTGATGATTTAAAAGCTTTTCATGATAGTAATACTGATGGGTTAAGCATGAATTCCTTTCCCagtcatatttttttgttacaaGCTATAGAGGATTTCTCATCTGTACTTAAGCAAGATAATGAAGAGAATGACACAAGAGACTACTCAATTTTACAGAAAGTCCAGCAAAATGGAGCAACATACCGCACACATTTTTCTTTACATGGTGAGTGGAAATTAGGGTCACAAGATGAAGGGCCATCCCATTTGTTTTGGACAAACGTTTTGGAGGGAAAAAATCCTCGGTGGAAATATTCGGGTGGTTCTTCTCAGCGGAGTCGGAAAAGGGTTCAACTTTTTGATGGTTCTGGAAATAGAACTGACTTTGAGACTGAAGAAACCATGAAAAAGCGCACAAAAGTGATAAATAATGTTGATCAACCTTCTTCAAAAAGTGAAGTTGGAAAATTATTTACTGAAAACAAAGAAAGACCACGAGGTAATGATGTTGAATATGAGAAAGTAAGGAAATTGCATGATGAGCAGAGGAGTTTACATTTTTCGCTGAAGTCAGAGATAGTAAAGCTTTGTGAAGGTCTTCGTCTCCCAGAGAATGTCAAGAGGATGGCTGGTGAATTTCTCGAATATGTTATGAACCATCACCATGTCAATAGGGAATCAGTGTCAATATTGCAGGCTTTTCAAATATCTCTGTGTTGGATTGCTGCTTCTTTGGTAAAGCACAAAATTGACCACGAAGGTTCCCTTATGATTGCAAAAGAGCTTTTACATTTTGAATGTAAGAAAGAAGAAGCAGACTATATTTACTCAATGTTGCGGTGTctgaagaaaatatttttgtaccGTACTGGAAAGTCCAATTACACTATCTCTCCAAAAGCTTCTGATTCTTCCTCTATGGAATGGCCACCAGAGGTTGAATTGGCTGTGAAGGatgttttaaaaagtattaaagAAATTCAAAAGAAGTGCCAAAAGAAGCTGATGAAGCTAAGTCATAAGCATGAGGAAGACAAAAATAAGTTGAATAAAACATATGAGGAAGAAAAGGCTGATCTTGAGAAAAAGTACCAAGTGGAGTCAGTTGTTATTCGATCCATTACTCCCAATCCCAATGATATGATGAGAACAGAAAAGCTTAGGGCTTTAGATATTGAATATACTAGAAGAATTGAAGATTTAAAGTGCCAACATGAAATACTTCTCAAAGATCTTGAGACTGCGCAATTGGCAGCTAGGCAAAAGTTCAAAGATAGGGAGACCACTTGGGTGGAAGACGTGAAGTCCTGGgcaggagatgaattgttgaacATACTTCCTTCAAAAGAACATGGGAATGGGATAAAATACTTGAAGACTGGTGAACTAGCTGAGGGTTCAAATTTTGATAGAATAGTTGAAGCCATAAAAGGGACTGGGGTTGGGTTGTCTAATACTCCTGAAACAATTTCCCCTGTAGAAGTACCATGCCGTAAACCAGTTGAAACACAAAGTCCTTTGTTCAAGTCTGCTAGTGCTAATGAGGTCAATGACAAAGCTCAAAATGCATGTGATAATCAAGGGAAAGTAATCTCTATACACTCCCACTCTGAGGAACATAATTCTGATGGTACCGCAAGTATGATAAAGAAAGGTGAAGGACATGGTTCAGAGAATGATATAACTGTGGATCCTCCTTTGACCATGGAGCTAATTTCTGATGGAGCTGTTTTAAATGTTTCTAATAGAGAGTTATCATCAAAACTGTGTGGAAATCCACCCTTGCCTGTTAAACAAATTTTTGACAGAGGCTCGTCATGCATACATGCTGGGCAAATTCCAGTTGAAGTACCTGAAACTAGTTGTGATTCAGCTGAATGTCATAATGGCAGAGAACACCAAACAGATGTGGTATTGCTGGATGAAATCTCCATCACATTGGATGAGCAGGTACCAAGAGATGTGACTGTGGGAGAAATGCAGAAATCTTCCCAGCAAGTTGAGCAAGTACCTATTCCTGGTGATGTTTTACCAGCTGATCATTCTAATCTAGAGATGGGGCAAGTACCATCTGCTGAGTCCCTCCCTTCCAACCTGGATGCTGCAGGAGAAAAGCAGAACTCTTCTCAGCAAGTTGAGGCAGTGTGCAGTCCAGTTGACGCATTACCAGCTGATAAATCTAATCATGACTCAAACATGAACCCTCTGGAGCAAGCGCAGCAATTACCATCTGCTGAGTCTCTCCCTTCCACCCAGGATGCATCTGCAGAAATGCAAAACTCTTCTCAGATAGTTGAGCAAATTTGTAGTCCAGTTGATGCTTTACCAGCCGATCAATCTAATCAGGACTCAAACATGGAGCCTCTAGAGCACATGCTGCAATTACCATATGAAAAGTCCCTTACTTCCAATCCGGATACAGCAGAAGAAATGCAGAACTCTTCCCAGCAAGTTGAGCCAGTGTCGTTGGCCATAGAACCACAAGAGCCAGTTCAGCAATTATCAATTGCAGAGTCTCCTTCCTTAAACCAGTATACATCTGGAGAGATGCACAACTCTTCCCAGCAAGTTGAGGCAGTATCTAGAGAAGTTGATGTGGCGCCAGCCAATCAATCTAATAGCGAGTCGCTGGTCATGGAGCCTCTAGAACGAGTGCATCAATCACCATCTACAGAATCCCCTAATTCAAACCAGGATCCATCAGTGGAGATTACAAATCAGGCCATTGTACAACCTTCTGAACTTGATTCACATACATCTGTTAGTGCATCCAGCATGCATTCTTCGGACACAAGAAATGTGTCCACTCCTTTAGATGGCAATAATCGTTTTATTCAAACTGCAACCCAATCTGCGAACAGGATGCTTCCACCTTTGTACTCTGATCCTCTTAAAAATGAATTGGAGAGACTACGCAAAGAAGCAGAgcaaaacataaaaaaccaTGAAGAAATGAAATTGCAGTTGAAATCTGATTGTGAGAGGGAAATAGAGGAAATTCGCCGGAAGTATGACAAAAAATTACAGGAAACTGAGACTGAGTTTCAACTGAAAAAGAATGACTTGGATACAAGTTTAAACTTAGTTTGCATGAATAAGATATGGGCAGAGGCGTTTAGGTCTAAATGCCAGGATCTTAAGGTATCTGGTGCGTCAGGACTGCAACAAGATGCAAGTTCCGCACAGCAATTGGAACGTCATTCAAGACAGCATAGAGACACCAGGTCTCCCCTTGTTGCAAGTTCATCTTGTAGGCCTCCTGCATCCACTCTGCAGCATTTCTCGACTATGGCTAGCTTGCAGACTATGGTGCCATCTTCTCAGGCTGCTTACAGTACACCTGGAATTGGCTCCGTTGTTCCTGCAAGACCGCCTCATATCAACCCCATCATTCCTCCATCAGGAAATCATCAAGCTGGTAGTGGCTTTCGTGCCACTCCACCACATCTCCAGGCTTATAGACCTTCTTCAACTTCTATGCATGACGCTAGTCTCTCTACCCCTCCACATGGGATCTCAAGTCAGCAACCTCTTAATAACATCCCTGCagtttcttcattttctcacCATCCTCCACCAGCAGGACGACCAACCTATCTACATGTTCCTCCTAGGAGGGTGCATTGGCCAGAAAGGTCTGTAGGGTTACCCCTGCCTAACTTACCTTCCATGGAGCCAAATTTTGGTGCTAATAATCAACTGGGTGTAAATCTGTCGAACTCTATTTTACGTATGTCAAATGTGGCTTCATTGAACCAACCTATGCCCTCCGGTCCTGATAGTAGCATGCGGGATAGTACTACCCATCAAGCTACCTCTGCTGACTTGGTCTGTTTATCTGATGATGATTGA 6573 0.3966 MANTTSSSRRVKVDENNNRRCVSEMGPTNSSSPVSDAAGLRRSARETLSKKTTPSPLPSPQKSEQLGKRKSLSPVVRRKSERFEKKNIPSPLRRSKRTMNNSTLASLDVKSMGSSISKQKKLKKQKSVKQLTFEAKGVSENEELDAEASPVKNKRMNAREYRAMLKKKPKIDGHEESNRRNNLVQEGGNNKEGKIAECLKGSYLDCKEVYKNLPSENAKESINLSAKEDRGEIEVGITSKMPDKEKETSAKISTDDEQICLICKCGGQLLFCNGKGCNSCYHISCLEPPMVDARLGVWHCHLCLRKKIQLGVYSVSEGVESICDTREVEVSNLDGLSTIEKQFLVKYKGLAYVHCRWVPESQLLLEAPLLLKEFNQQDQRVSSLQVLRWKPEWSLPHRLLHKRASISTKQHGDPMSGQAVDNFDCHYEWLVKWRGLGYEHASWELDNASFLNSPEGQRLIKDYEDRHQRAKSVTLNSKNVDRVSSLSKLSQMPGGISPGYGNNNLDAVNKLREHWQKGQNAIIIDDHDRIVKVVAFVLSLHNDTYRPFLIISTTAALQYWEDEFSRWASSVNVIVYSGNKEIRRSIRKLEFWDDAGCLLFRVLIVLPDIIIEDLDVFGGIAWEAIIVDECSKISSSLKQTKMLNADLRILLLSGQLKDNIIEYNNILALLDCQHCSEDNEELICNSSDRIGVLKDKLSSYVAYRCKSDFSRFVEYWIPVKISNVQLELYCATLLSNSSTLRSSSCKSALVEALRDILITTRKSIGGFGKVSIGDILDDFMRQRFGPDSYERVDKYVVHSKKQNALKMFNNKDHGRFVFLLETNACLPSIKLSSVDTIIIFDSDWNPLNDIRSLQRITLDSKLERIKIFRLYSSFTVEERALILAKQDKPLDSNLQNISWSISHMLLMWGASWLFDDLKAFHDSNTDGLSMNSFPSHIFLLQAIEDFSSVLKQDNEENDTRDYSILQKVQQNGATYRTHFSLHGEWKLGSQDEGPSHLFWTNVLEGKNPRWKYSGGSSQRSRKRVQLFDGSGNRTDFETEETMKKRTKVINNVDQPSSKSEVGKLFTENKERPRGNDVEYEKVRKLHDEQRSLHFSLKSEIVKLCEGLRLPENVKRMAGEFLEYVMNHHHVNRESVSILQAFQISLCWIAASLVKHKIDHEGSLMIAKELLHFECKKEEADYIYSMLRCLKKIFLYRTGKSNYTISPKASDSSSMEWPPEVELAVKDVLKSIKEIQKKCQKKLMKLSHKHEEDKNKLNKTYEEEKADLEKKYQVESVVIRSITPNPNDMMRTEKLRALDIEYTRRIEDLKCQHEILLKDLETAQLAARQKFKDRETTWVEDVKSWAGDELLNILPSKEHGNGIKYLKTGELAEGSNFDRIVEAIKGTGVGLSNTPETISPVEVPCRKPVETQSPLFKSASANEVNDKAQNACDNQGKVISIHSHSEEHNSDGTASMIKKGEGHGSENDITVDPPLTMELISDGAVLNVSNRELSSKLCGNPPLPVKQIFDRGSSCIHAGQIPVEVPETSCDSAECHNGREHQTDVVLLDEISITLDEQVPRDVTVGEMQKSSQQVEQVPIPGDVLPADHSNLEMGQVPSAESLPSNLDAAGEKQNSSQQVEAVCSPVDALPADKSNHDSNMNPLEQAQQLPSAESLPSTQDASAEMQNSSQIVEQICSPVDALPADQSNQDSNMEPLEHMLQLPYEKSLTSNPDTAEEMQNSSQQVEPVSLAIEPQEPVQQLSIAESPSLNQYTSGEMHNSSQQVEAVSREVDVAPANQSNSESLVMEPLERVHQSPSTESPNSNQDPSVEITNQAIVQPSELDSHTSVSASSMHSSDTRNVSTPLDGNNRFIQTATQSANRMLPPLYSDPLKNELERLRKEAEQNIKNHEEMKLQLKSDCEREIEEIRRKYDKKLQETETEFQLKKNDLDTSLNLVCMNKIWAEAFRSKCQDLKVSGASGLQQDASSAQQLERHSRQHRDTRSPLVASSSCRPPASTLQHFSTMASLQTMVPSSQAAYSTPGIGSVVPARPPHINPIIPPSGNHQAGSGFRATPPHLQAYRPSSTSMHDASLSTPPHGISSQQPLNNIPAVSSFSHHPPPAGRPTYLHVPPRRVHWPERSVGLPLPNLPSMEPNFGANNQLGVNLSNSILRMSNVASLNQPMPSGPDSSMRDSTTHQATSADLVCLSDDD 2190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0319 2190 Coils Coil 1246 1270 - -
Sto12g0319 2190 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 752 905 IPR001650 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1568 1670 - -
Sto12g0319 2190 ProSitePatterns Zinc finger PHD-type signature. 260 303 IPR019786 -
Sto12g0319 2190 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 768 2104 - -
Sto12g0319 2190 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 762 - -
Sto12g0319 2190 Pfam Chromo (CHRromatin Organisation MOdifier) domain 319 376 IPR023780 -
Sto12g0319 2190 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 512 674 IPR014001 -
Sto12g0319 2190 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 768 2104 - -
Sto12g0319 2190 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 5 762 - -
Sto12g0319 2190 SMART chromo_7 392 468 IPR000953 -
Sto12g0319 2190 SMART chromo_7 316 379 IPR000953 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1964 1994 - -
Sto12g0319 2190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 893 IPR027417 -
Sto12g0319 2190 Gene3D - 769 930 IPR027417 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 167 188 - -
Sto12g0319 2190 SUPERFAMILY Chromo domain-like 390 467 IPR016197 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1822 1848 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1776 1808 - -
Sto12g0319 2190 Gene3D - 386 466 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 167 181 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1594 1622 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 93 116 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 2157 2182 - -
Sto12g0319 2190 SMART PHD_3 259 304 IPR001965 -
Sto12g0319 2190 ProSiteProfiles Chromo and chromo shadow domain profile. 317 386 IPR000953 -
Sto12g0319 2190 ProSiteProfiles Zinc finger PHD-type profile. 257 306 IPR019787 -
Sto12g0319 2190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 312 IPR013083 -
Sto12g0319 2190 Pfam SNF2-related domain 529 746 IPR000330 GO:0005524|GO:0140658
Sto12g0319 2190 SUPERFAMILY FYVE/PHD zinc finger 251 307 IPR011011 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 74 91 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 49 68 - -
Sto12g0319 2190 Coils Coil 1305 1325 - -
Sto12g0319 2190 Gene3D - 499 717 IPR038718 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 2061 2080 - -
Sto12g0319 2190 Coils Coil 1872 1928 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 2157 2190 - -
Sto12g0319 2190 Gene3D - 318 381 - -
Sto12g0319 2190 SUPERFAMILY Chromo domain-like 276 378 IPR016197 -
Sto12g0319 2190 Gene3D - 1867 1949 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1793 1808 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1444 1467 - -
Sto12g0319 2190 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 538 675 IPR027417 -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1 128 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 1634 1670 - -
Sto12g0319 2190 MobiDBLite consensus disorder prediction 21 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0319 Sto-Chr12 1948389 1967640 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sto12g0319 SNF2_N 1.1e-10 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0319 - K11643 aprc:113854369 1519.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0319 12 1948389 1967640 Sto12g0319 12 1948389 1967640 ECH