Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0318 atgttaCAAGATCGGAACGACGACGCTTTGAAGTGGGAGTCGGCGGCGGAGTCTATGAAGGGGAGCCACGTGGAGGAGGTGAAGAGGATGGTGAGGGAGTACCGAGGGAGAGTGGTGAGGGTGGGAGGAGAGACGCTGACGGTGGGGGAGGTGGCGGCGGTGGCGGAAGGGAGGGCGGCGGTGGAGATGGAGGATGGGAGGAGGGAGGGAGTGGAGGCGAGCAGCGCGTGGGTGATGGAGAGCGTGAGGAAAGGGACAGACAGTTACGGGGTCACTACGGGCTTCGGTGCCACGTCGCATAGGAGAACAAGGCAAGGGGTGGCGCTCCAGACCGAGCTCATCAGGTTTTTAAATGCTGGAATATTTGGGAATGATGGAAGAGAAGGTTGCCATACGTTGCCACACAGCGCAACAAGAGCTGCTATGCTGGTTAGAATCAACACTCTGCTTCAAGGCTACTCTGGCATCAGATATCACATACTTGAAGCCATTGCAAAACTACTCAATCACCGCATCACACCATTGTTGCCCTTGCGTGGTTCAATTTCAGCCTCTGGGGACTTGGTCCCTTTTTCATACATAGCTGCTCTTTTGACAGGAAGGCCTAATTCTAAAGCCATTGGTCCCAAAGGTGAGTCCTTGACTGCTTCAGAAGCCTTTCATCTCGCCGGTATCCACGGAGGCTTCTTCGAGCTGCAGCCAAAGGAAGGTCTTGCTCTTGTTAATGGCACTGGGGTTGGAGCTGGTTTGGCTTCTTTAGTTCTTTTCGAGGCTAACATTTTAACCATTCTATCTGAAGTTATGTCTGCAATTTTTGCTGAAGTTATGCACGGCAAGCCCGAGTTTACAGACCATTTAACACACAAGTTGAAACACCATCCTGGGCAGATTGAAGCTGCAGCAATTATGGAACACATCTTGGATGGAAGTGCTTATGTTAAAGCAGCACAAAAGTTGCATGACATTGATCCTTTCCAAAAGCCTAAGCAAGATAGATATGCTCTTCGAACTTCGCCGCAATGGTTAGGTCCTCAGATTGAAGTGATCAGGTCATCAACAAAATCCATTGAGAGAGAGATCAACTCTGTGAATGATAACCCTTTGATTGATGTATCCAGGAACAAGGCACTTCATGGAGGCAATTTTCAGGGTACCCCAGTTGGTGTTTCCATGGATAACACAAGATTAGCTTTAGCTGCTATTGGAAAACTCCTTTTTGCTCAAATGTCTGAGCTTGTTAATGATTTTTACAATAATGGGTTGCCTTCAAATCTCTCTGGGGGTCGCTGTCCGAGCTTGGATTATGGATTCAAAGGCGGTGAGATAGCGATGGCTTCATATTGTTCTGAGCTTCAGTATCTAGCAAACCCAGTTACCACTCATGTCCAAAGTGCTGAACAACACAACCAAGATGTGAACTCATTAGGACTAATCTCTGCCAGGAAAACAGCTGAAGCAGTTGAGGTATTGAAGCTGATGACTTCGACCTACTTGATTGCTCTTTGTCAAGCCATAGATTTGAGGCATTTGGAGGAGAACTTAAAGAACACAGTCAAAAACACAGTGAGCCAAGTGGCTAAGAAAGTCCTAACCGTGGGTGTCAATGGGGAACTTCGTCCTTCAAGGTTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATCGTGAGCATGTTTTTGGCTACATTGATGAGCCATGTAATGCTAGGTACCCTCTGATGGAGAAACTGAGGCAAGTGCTTGTGGAACATGCATTGACGAGTAATGATGGTTGGAAAAGTGGGTATGCTTCCATATTCCTCAAGATTGGTGCCTTTGAGGAGGAACTGAAGACTGTTTTGCCTAATGAAGTTGAGTCTGCAAGAAAGGCCTTTGAGAAAGGGAGTTCAGCAATTCCTAACAAGATTAAAGAATGCAGGTCCTATCCACTTTACAAGTTTGTAAGGGAAGAGTTGGGGACGGAGTTTTTGACTGGAGAGAAAAGTAAGTCACCAGGAGAAGATTTTGAGAAGGTTTTCACTGCAATCAATCAGGGAAAGATGATTGATCCCATGTTTGAATGTCTTAAGGATTGGGACGGTGCTCCTCTTCCAATATGTTAA 2097 0.4669 MLQDRNDDALKWESAAESMKGSHVEEVKRMVREYRGRVVRVGGETLTVGEVAAVAEGRAAVEMEDGRREGVEASSAWVMESVRKGTDSYGVTTGFGATSHRRTRQGVALQTELIRFLNAGIFGNDGREGCHTLPHSATRAAMLVRINTLLQGYSGIRYHILEAIAKLLNHRITPLLPLRGSISASGDLVPFSYIAALLTGRPNSKAIGPKGESLTASEAFHLAGIHGGFFELQPKEGLALVNGTGVGAGLASLVLFEANILTILSEVMSAIFAEVMHGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAQKLHDIDPFQKPKQDRYALRTSPQWLGPQIEVIRSSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPVGVSMDNTRLALAAIGKLLFAQMSELVNDFYNNGLPSNLSGGRCPSLDYGFKGGEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISARKTAEAVEVLKLMTSTYLIALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTVGVNGELRPSRFCEKDLLKVVDREHVFGYIDEPCNARYPLMEKLRQVLVEHALTSNDGWKSGYASIFLKIGAFEEELKTVLPNEVESARKAFEKGSSAIPNKIKECRSYPLYKFVREELGTEFLTGEKSKSPGEDFEKVFTAINQGKMIDPMFECLKDWDGAPLPIC 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0318 698 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 9 688 IPR005922 GO:0005737|GO:0006559|GO:0016841
Sto12g0318 698 PANTHER AMMONIA-LYASE, PUTATIVE-RELATED 7 698 - -
Sto12g0318 698 CDD PAL-HAL 44 508 IPR001106 -
Sto12g0318 698 Gene3D - 2 244 IPR024083 -
Sto12g0318 698 Pfam Aromatic amino acid lyase 46 521 IPR001106 -
Sto12g0318 698 Gene3D Fumarase/aspartase (Central domain) 246 692 - -
Sto12g0318 698 SUPERFAMILY L-aspartase-like 8 698 IPR008948 GO:0003824
Sto12g0318 698 Gene3D - 511 632 IPR023144 -
Sto12g0318 698 PANTHER HISTIDINE AMMONIA-LYASE 7 698 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0318 Sto-Chr12 1944878 1947458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0318 7 698 Monolignol Biosynthesis Gene Families AT2G37040 77.378 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0318 K10775 - tcc:18590901 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0318 12 1944878 1947458 Sto12g0318 12 1944878 1947458 ECH