Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0306 ATGAAGGAAGCCGAAAAGACTTTGGATCCACAGCTATGGCACGCCTGCGCTGGAGGCATGGTTCAGATGCCTCCCCTCAACTCCACAGTCTTCTACTTTCCTCAAGGCCACGCCGAGCATGCTCAGGCCACCGTCGATTTCGCCGCCTCCCTCAGAATCCCACCTCTCATTCTCTGCCGCGTCGCTGCTGTCAAATTCCTCGCCGACCCCGACACCGACGAGGTCTACGCCAAGATCAAGCTAATCCCTCTGAGAAACTCCGACCTCGATTACGCCGACGACGACGGCGGCGGAATCGGCGACGGAAATACCGACGGGCCTGAGAATTCAGACAAGCCCGCGTCCTTCGCCAAGACATTAACCCAATCCGACGCCAACAATGGCGGAGGCTTCTCTGTTCCGAGATACTGCGCAGAAACCATATTCCCTCGGCTTGATTACTCGGCGGAGCCACCGGTCCAGACGGTGATCGCGAAGGACGTTCACGGTGAGATTTGGAAATTCAGGCATATCTACCGAGGGACGCCGCGTCGTCACCTCTTGACGACTGGGTGGAGCACTTTCGTGAACCAGAAGAAACTGGTGGCAGGGGATTCTGTTGTGTTCCTGAGAGCCCAAAATGGGGATCTGTGTGTGGGGATTCGCCGAGCCAAGAGGGGCATCGGCGGTGGATCGGAGGTCCTTTCAGGGTGGAGCTCCGGTGCCGGGAACTGTATGGGAGCGTATGGGGCTTTGAGTGTTTTCTTGAGGGAAGAGAAGCAGGTGCTGCGAAATAACTCGAATTCGAATTCAAATGGTGGGAGAGGCAGAGTGAGACCTGAATCTGTGATGGAAGCTGTGTCGCTTGCTGCGAGTGCTCAAGCATTTGAGATAGTGTACTATCCTCGAGCGAGCACTCCCGAGTTCTGCGTGAAGGCTGGGAGTGTAAGAGCAGCCATGAGAATCCAATGGTGCTGTGGGATGAGATTCAAGATGGCTTTTGAGACAGAGGATTCTTCCAGAATCAGCTGGTTCATGGGCACTGTTGCTTCTGTTCAGGTCCTTGATCCTATTCGCTGGCCTAATTCCCCATGGCGACTTCTTCAGGTTAGTTGGGATGAGCCAGATTTGTTACAGAATGTGAAGCGGGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACAGGCCGGTGATCCATGTGACGACGCCCTTCTCTCCACCTCGGAAGAAGCTCCGGCTTCCTCACCATGCGGACTTCCCCGGCCTCGATGGTCATTTCACATTTGCGGGTGGGGGCAACCCCAGCAGCCCCTTGTGTTGTGTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATTTGGATTGACTCTTTCAGATTTCCACCTTAACAACAAACTCCACTTAGGGCTGCATCCCGCCATTTCTCATCCCAATTTCATGATGacccatcatcatcttcatgacAACAAAAATGACAGCTTGTCATGCTTGCTTACCATGGGAAATTCTTACAACAAGAGTTTGGAAAAATCTGATAATATTGTCAAGACACAGAGACACCAGTTTGTGCTTTTCGGTCAACCCATACTGACCGAGGAGCAACAAAATTGTCCAACCAACGACCATGACAATAAGGATAAGGCAAAGTGCTTGTTTGGGGTGGGGGATTCTGATTTGGATACTGATACTGGTCATTGTAAGGTTTTCATGGAATCCGAAGACGTGGGACGTACTCTGGACCTTTCGCGCCTCGATTCCTATGAAGAGCTCTATAGGAGACTGGCCAACATGTTTGGACTCGATACATCTCACATGTTCACCCATGTCCTTTACCGTGATGCTACTGGTGCTCTTAAACAAACCGGAGAAGAGCCCTTCAGTGACTTTATGAAAACAGCAAAAAGATTGACAATTCTGACTGATTCTGGCAGCAAAGATGTTAGAAGGGCTTGGATGACAGGATCTCGAAATGGAGAGCATGGGTTGGATGCATCAAATAAGACAGGTTTTCTGAGCATATttgcctaa 2019 0.5067 MKEAEKTLDPQLWHACAGGMVQMPPLNSTVFYFPQGHAEHAQATVDFAASLRIPPLILCRVAAVKFLADPDTDEVYAKIKLIPLRNSDLDYADDDGGGIGDGNTDGPENSDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAQNGDLCVGIRRAKRGIGGGSEVLSGWSSGAGNCMGAYGALSVFLREEKQVLRNNSNSNSNGGRGRVRPESVMEAVSLAASAQAFEIVYYPRASTPEFCVKAGSVRAAMRIQWCCGMRFKMAFETEDSSRISWFMGTVASVQVLDPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNRPVIHVTTPFSPPRKKLRLPHHADFPGLDGHFTFAGGGNPSSPLCCVSDNAPAGIQGARHAQFGLTLSDFHLNNKLHLGLHPAISHPNFMMTHHHLHDNKNDSLSCLLTMGNSYNKSLEKSDNIVKTQRHQFVLFGQPILTEEQQNCPTNDHDNKDKAKCLFGVGDSDLDTDTGHCKVFMESEDVGRTLDLSRLDSYEELYRRLANMFGLDTSHMFTHVLYRDATGALKQTGEEPFSDFMKTAKRLTILTDSGSKDVRRAWMTGSRNGEHGLDASNKTGFLSIFA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0306 672 PANTHER AUXIN RESPONSE FACTOR 2 649 - -
Sto12g0306 672 Gene3D - 557 644 - -
Sto12g0306 672 Gene3D - 114 218 IPR015300 -
Sto12g0306 672 ProSiteProfiles PB1 domain profile. 560 640 IPR000270 GO:0005515
Sto12g0306 672 Pfam Auxin response factor 279 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sto12g0306 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sto12g0306 672 MobiDBLite consensus disorder prediction 93 115 - -
Sto12g0306 672 SUPERFAMILY DNA-binding pseudobarrel domain 110 219 IPR015300 -
Sto12g0306 672 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Sto12g0306 672 CDD B3_DNA 115 216 IPR003340 GO:0003677
Sto12g0306 672 SMART B3_2 116 218 IPR003340 GO:0003677
Sto12g0306 672 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Sto12g0306 672 Gene3D - 316 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0306 Sto-Chr12 1847055 1849565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0306 3 646 B3 DNA Binding Superfamily AT2G28350 61.842 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sto12g0306 B3 1.9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0306 - - qsu:111995036 924.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0935 7 7346471 7348950 Sto12g0306 12 1847055 1849565 CCT
Sto12g0306 12 1847055 1849565 Sto12g0306 12 1847055 1849565 ECH
Sto12g0306 12 1847055 1849565 Sto7g0935 7 7346471 7348950 ECH
Sto8g0899 8 5668268 5670494 Sto12g0306 12 1847055 1849565 ECH
Sto13g3225 13 36199068 36200984 Sto12g0306 12 1847055 1849565 ECH