Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0303 ATGGCCATGGCTATGGCTCACCACAGAGAAAGCAGTAGCGGGAGCATCAACAAGCACCTTGATTCCGGCAAGTATGTCCGATACACGGCGGAGCAGGTGGAAGCGCTCGAACGAGTTTACGCTGAGTGCCCCAAACCAAGCTCTACGCGAAGGCAACAATTGATCCGAGAGTGTCCTATTCTTGCCAACATAGAGCCCAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGGTGTagagagaagcagagaaaagAGGCAGGGCGGCTTCAGACTGTGAACAGGAAACTGACAGCGATGAACAAGTTGCTGATGGAGGAAAATGATCGTTTGCAGAAGCAGGTGTCACAACTAGTATGCGAGAATGGGTTTATGAGGCAGCAATTGCAAAGTGCATCAGCAACACCTACTGATGCAAGTTGTGATTCGGTGGTCACTACGCCTCAGCACTCTTTAAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACCTTGGCAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGCGGTCTTGTTAGTTTAGAACCTACAAAGATTGCGGAGATCCTAAAAGATCGTCCATCTTGGTTTCGGGACTGTCGGAGCCTGGAAGTTTTCACTATGTTCCCTGCTGGAAATGGAGGAACAATTGAACTTGTTTACACCCAGACATATGCTCCAACAACATTAGCTGCTGCCCGGGATTTCTGGACTCTTAGATACACTACAAGTTTGGACAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCTGGTTCGGGTGCTGGTTCtaatgctgctgctgctgcagcTCAGTTTGTGAGAGCTGAAGTGCTCCCCAGTGGCTACTTAATTCGACCATGTGAAGGTGGAGGTTCAATCATCCACATTGTAGACCACCTAAATCTTGAGGCATGGAGTGTGCCAGAGGTGCTCCGACCTCTTTATGAATCATCAAAAGTGGTAGCTCAAAGAATGACAATTGCGGCACTACGTTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGaagtggtttatggtttgggtagACAGCCTGCTGTTCTTCGAACTTTCAGCCAGAGGCTGAGCAGAGGCTTTAATGATGCTGTCAATGGATTTAGTGATGATGGGTGGTCCATATTGAACTGTGATGGTGCCGAGGATGTAATTATTGCAGTCAATTCAACCAAGAGTCTCAGTTCTGCTTCTAATCCAGCAAGTTCCTTAACATTCCTTGGAGGAGTTCTCTGTGCAAAGGCTTCCATGTTACTCCAGACCTTGATAGCTTATTTGTTTTTGGCCTATGAAGAAGACCTTGATAGAGTTGTTCTTCCCTTAAAGAATGTTCCTCCTGCTGTTTTGGTTCAGTTTCTGAGGGAACACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCCTATTCTGCTGCATCACTAAAAGCTGGTTCCCTTGCTTATTCTGGAATGAGGCCCACGAGGTTCACTGGAAGTCAATTTATAATGCCCCTTGGCCATACAATTGAACATGAAGAGATGCTTGAAGTTATTCGTCTGGAAGGCCACTCTCTTGCTCAGGAAGATGCTTTTGCTTCGAGGGACATTCATCTCATACAGATATGTAGTGGGATTGATGAAAATGCAGTGGGGGCATGTTCTGAGCTCATATTTGCTTCAATTGATGAAATGTTCCCCGATGATGTTCCATTGCTGCCTTCTGGTTTCCGCATCATTCCATTGGATTCAAAACCAGGTGATAAGAAAGATGCTGTATCTGCAAATCGGACCCTAGATTTGACATCCGGTCTTGAAGTGGGCCCAGCTACTAATCAAGCTACGGGAGATGCATCGTCATGTCATAATACTAGATCAGTGTTGACTATTGCCTTCCAGTTTCCTTTTGACAGCAGTATGCAGGAAAATGTTGCAATTATGGCACGGCAGTATGTCCGAAGTGTGATTTCATCTGTGCAGAGGGTTGCCACGGCTATATCTCCATCTGGTATAAGCCCACCTGTTGGACCAAAACTCACTCCTGGCACTCCAGAAGCTATTACACTGGCTCACTGGATATGCCAGAGTTATAGCTTGAGATTTATTAAGTTCTGTATGATGGTGGTCTATTGCGATGTTCTTGAATTAACTTTCAAGCTTTATCATCTGGGCGCTGAATTATTGAGATCCGAGACTGTTGTTGGTGACATGTTGCTGAAACATTTATGGCATCATCAGGATGCCATTTTGTGCTGTTCATTGAGGTCCTTGCCAGTGTTCACCTTTGCAAACCAGGCTGGGCTTGACATGCTGGAAACAACTCTAGTGGCTCTACAAGATATCACATTGGATAAAATCTTTGATGAGTCTGGACGCAAGGCACTGTCTACAGACTTTGCCAAGTTAATGGAGGAgGGTTTTGCATACCTGCCAGCTGGCATCTGCATGTCCACAATGGGGCGGCACGTTTCATACGAGCAAGCCATCGCATGGAAAAATATAacagaaaaggaaaattttggaGAGGGAAAAATGAATGCGAAAGTTTTGTTCTTGTACAACACAGGGTCAGGTTCTCACCAGTTTACGACGATAGTGTTCTTCTCAGACCATCACTATATGAAAGCTTTCCAAGCCTGTGCCTGTCATCAACGTTATCTTTACCGGGATGCCAAGGACCAGAAGTTGAGGAGGAATGACGGCACTGTGGTGAACCAACAAATGAAAGCCATTCCTGTAGCAGTTTCAAACTGCACACAGTGA 2862 0.449 MAMAMAHHRESSSGSINKHLDSGKYVRYTAEQVEALERVYAECPKPSSTRRQQLIRECPILANIEPKQIKVWFQNRRCREKQRKEAGRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGFMRQQLQSASATPTDASCDSVVTTPQHSLRDANNPAGLLSIAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRDCRSLEVFTMFPAGNGGTIELVYTQTYAPTTLAAARDFWTLRYTTSLDNGSLVVCERSLSGSGAGSNAAAAAAQFVRAEVLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQRMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFSDDGWSILNCDGAEDVIIAVNSTKSLSSASNPASSLTFLGGVLCAKASMLLQTLIAYLFLAYEEDLDRVVLPLKNVPPAVLVQFLREHRSEWADFNVDAYSAASLKAGSLAYSGMRPTRFTGSQFIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFASRDIHLIQICSGIDENAVGACSELIFASIDEMFPDDVPLLPSGFRIIPLDSKPGDKKDAVSANRTLDLTSGLEVGPATNQATGDASSCHNTRSVLTIAFQFPFDSSMQENVAIMARQYVRSVISSVQRVATAISPSGISPPVGPKLTPGTPEAITLAHWICQSYSLRFIKFCMMVVYCDVLELTFKLYHLGAELLRSETVVGDMLLKHLWHHQDAILCCSLRSLPVFTFANQAGLDMLETTLVALQDITLDKIFDESGRKALSTDFAKLMEEGFAYLPAGICMSTMGRHVSYEQAIAWKNITEKENFGEGKMNAKVLFLYNTGSGSHQFTTIVFFSDHHYMKAFQACACHQRYLYRDAKDQKLRRNDGTVVNQQMKAIPVAVSNCTQ 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0303 953 Pfam MEKHLA domain 755 872 IPR013978 -
Sto12g0303 953 Pfam START domain 163 371 IPR002913 GO:0008289
Sto12g0303 953 SUPERFAMILY Homeodomain-like 22 86 IPR009057 -
Sto12g0303 953 SMART HOX_1 21 87 IPR001356 GO:0003677
Sto12g0303 953 Gene3D - 197 380 IPR023393 -
Sto12g0303 953 ProSiteProfiles 'Homeobox' domain profile. 19 83 IPR001356 GO:0003677
Sto12g0303 953 CDD homeodomain 24 84 IPR001356 GO:0003677
Sto12g0303 953 Pfam Homeodomain 24 82 IPR001356 GO:0003677
Sto12g0303 953 ProSiteProfiles START domain profile. 153 382 IPR002913 GO:0008289
Sto12g0303 953 SUPERFAMILY Bet v1-like 162 375 - -
Sto12g0303 953 Gene3D - 17 88 - -
Sto12g0303 953 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 482 871 IPR044830 GO:0003700
Sto12g0303 953 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 465 IPR044830 GO:0003700
Sto12g0303 953 Coils Coil 93 120 - -
Sto12g0303 953 CDD bZIP 76 115 - -
Sto12g0303 953 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 465 - -
Sto12g0303 953 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 482 871 - -
Sto12g0303 953 SMART START_1 162 373 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0303 Sto-Chr12 1811886 1819161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0303 1 871 Homeobox Transcription Factor Family AT5G60690 77.918 0.0 1382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto12g0303 START 7.4e-46 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0303 K09338 - gmx:100804870 1436.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0303 12 1811886 1819161 Sto12g0303 12 1811886 1819161 ECH
Sto12g0303 12 1811886 1819161 Sto7g0941 7 7392502 7398622 ECH