Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0292 ATGCGTTTGCTCTTTTGGCAACAGTTGCCTCTGCTTATAGTGATCCCACTTCTATATCCCAACAAATTCTGCAACAAATTATATGCTGAAGCTTTGTTCAGTTTCAAGAGTAGCCATAGGAGTCCCCAGCAAGTCCTATGTAGCATTGCAAAATATCCATGTGAAAGGGCATGTCTCCACTGCCATGAACTAAAAGACCCATGTGCTTTTTCTCTGGGTATACCAGCAAGGATAGATGGGACTAATGATGTTCCAACGCTTACACCTGTGCAAGAAGCTCAGGTTAAAAGACATGAAGGAACAAGGGTTGCTGCCATTGTTGGTGGTGTTGTTGCTGCCTTTCTTGTGGTTGTTATTCTAGTGATTGTCTATGTCTGCTTGATGCGTGTTAAGAGATTTATAAGGCAAACATCTGAGGCTGCTTCTTCTATTCCATCTCCTACTGTTGAATTGGGAATGAGCAACAACTCACAAAACATACGGCGGTTCGCAATTTTAGAACTTGAACAAGCTACCCGAAACTTCAGCGAAAGTAATCTTATAGGTGAAGGTAGATTTGGCTTGGTTTACAAGGGTTTGCTTCAAGATGGATCTATTGTTGCTATAAAAAGGCGCCAATATGACCTGACTCAGAACTTCATCCCCCAGGTGAAGCAAATAGCTGACATCCACCACATGCATCTTGTCAAGATTATAGGTTATTATGAAGATAGCCATCAACAGTTACTTGTACAAGAATATCTCCCTAATGGAAATGTAGGGAATCACCTATATGACAGTGAAGGTTTACCCATTGGAAGGTTAGATATGTGGCGAAGGTTATCCATTGCTTTGGGGGCTTCCAAAGGACTGGCATATCTTCACAGTTGGGTTCCTCCTCTTGTGCACACACATTTCAGAACTAGAAATGTTCTTGTGGATGAAAGCTTCACTGCTAAGGTTTCTGATTACGGATTCTACAGATTGCAAACAAACTCTGACCACGCcggctcatcatcatcatcaaacatAGATTGCTTCCTTGACCCAGAGATGAATTTATCACAGGAATTTTCAGAGAAGAGTGATGTATACAGTTTTGGAGTCTTCTTACAAGAGTTGATTAGTGGACGAGAAGCACATATCGGAAATGTACAGGTAATTCAGGTACTATTATTATACACACTAAGCGGTACAAGCAGCAATGAGTTGGAGGAGTTTGTGGACGTAACACTAGGAAGCCATGAAAAGGGAGCAGCAAGAAAGGTGATGAAGTTGGCGTTGTTGTGTTTGGGTGGGAGTGTTAGAAGGCCATCCATGGATCAGATTGTAGGAGAGTTAGAGCGAATTCAAAGCGAATTTGGTGCTTTACATTCTAACAACAACCACGACTTTGGTGTGGTCACTCTCACTCTTGGGAGCGATCTCTTCAAATAA 1416 0.4131 MRLLFWQQLPLLIVIPLLYPNKFCNKLYAEALFSFKSSHRSPQQVLCSIAKYPCERACLHCHELKDPCAFSLGIPARIDGTNDVPTLTPVQEAQVKRHEGTRVAAIVGGVVAAFLVVVILVIVYVCLMRVKRFIRQTSEAASSIPSPTVELGMSNNSQNIRRFAILELEQATRNFSESNLIGEGRFGLVYKGLLQDGSIVAIKRRQYDLTQNFIPQVKQIADIHHMHLVKIIGYYEDSHQQLLVQEYLPNGNVGNHLYDSEGLPIGRLDMWRRLSIALGASKGLAYLHSWVPPLVHTHFRTRNVLVDESFTAKVSDYGFYRLQTNSDHAGSSSSSNIDCFLDPEMNLSQEFSEKSDVYSFGVFLQELISGREAHIGNVQVIQVLLLYTLSGTSSNELEEFVDVTLGSHEKGAARKVMKLALLCLGGSVRRPSMDQIVGELERIQSEFGALHSNNNHDFGVVTLTLGSDLFK 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0292 471 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 74 463 - -
Sto12g0292 471 Gene3D Transferase(Phosphotransferase) domain 1 248 464 - -
Sto12g0292 471 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 74 463 - -
Sto12g0292 471 ProSiteProfiles Protein kinase domain profile. 175 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0292 471 Pfam Protein tyrosine and serine/threonine kinase 179 383 IPR001245 GO:0004672|GO:0006468
Sto12g0292 471 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Sto12g0292 471 SUPERFAMILY Protein kinase-like (PK-like) 157 445 IPR011009 -
Sto12g0292 471 Gene3D Phosphorylase Kinase; domain 1 148 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0292 Sto-Chr12 1759845 1762318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0292 103 443 Receptor kinase-like Gene Family AT1G79620 34.943 4.10e-51 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Sto12g0292 PK_Tyr_Ser-Thr 3.2e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0292 - - gmx:100780443 553.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0292 12 1759845 1762318 Sto12g0292 12 1759845 1762318 ECH