Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0287 ATGAGTACTGAAGAAAAGGCTATGAGTGAAGGACATGACGCGGCTTCGTGCCAAAGGACAGTTTCTCTTCCAGTTCACAAAGTTGATGATCCAATGGGAATAACTGAAGAATCCTCACATGCTCGTGGTTGGAAGCGTCAGAATCTTTTCCTAGAAATACCTTCAAGATCATCAGAAGGGTCTTCTCAGGATTTTGTATCAATCAAGATGCCTCAGACACCAAGTCCTACTCCAACTCCCAAGAGAGTGAATTTTCTGGTGTCTTCCCGTTCTGTTGATGCCCCAATGAATAAGTCTCCTGGGCCATCTGCCTCAAAAACAAGACCATCCATAAGAAATCTCTTGCCAAAATTGAGCTTCAAGTATTTGACATCATCAGATAATGAAAAGGCTCCTGCTGCAGCTACAGAAGGTTCCTCTTCGGGCCCTCGAGAAAAGCCTTCAATCTCAAGAACATTGTCTCTTACTAAGATATTTACTCCTAGGATTAAGAGGACATCATCAATGCCAGTAGACGACATTTCACATTCAAATTCAGAATCTGCTCATGCTGCAAGTGTCGGTGCGTCCATACAGAGAAGAGACGCCCCGGGGAAGATTGCTCGCTCTCTTTCAGTGCCTGTcaacaataaagaaaaaagcTTAAGGAGGATGGACTCATTTTTCCGTGTTGTTCCTTCCACCCCTCGAGTGAAGGAAGGAATTGAATTGTCTACAGCATCCCCTGCAAATGATTCTGAAAATGATATTGCTGATGGTGAAGACATAGCTGAAGAAGAGGCCGTGTGCAGAATTTGTCTGGTTGATCTATGTGAAggaggggagactttcaagctGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCACACCAAGAATGTGCTATTAAGTGGTTTAGCATCAAGGGAAACAAGACCTGTGATGTGTGCAAGCATGAAGTTCGAAACCTACCCGTTACTCTCTTACGAATCCAAAGTGTTAGAGCTCGAAATGCTGGAGCAAGTAGGTCTCAGCTTGAAGATGTAAATGGATACAGGGTTTGGCAGGAAGTGCCTGTTCTAGTCATTGTGAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGTTGGTTGGAAAAATGGGTACTGGAGCAATTGCCATATCTCTTCCATTTTCATGTGTTCTAGGTCTACTCTCTTCCATGACATCATCAACAATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCCGCACAGTTTGCTCTGGTGGTTCTCTTCGCACATATATTTTACTCCTtgGTCCGGTTCCCAAACGTTCGAGTGCAAGCAGTTCTGTCAATCCTGCTTGCAACATTTGCTGGGTTTGGTGTGGTGATGAGTGGGAGTTCTATTCTTGTGGAGTTCTTCCGATGGAGAAGAAGATTGCAGGCTTTGTCAGAGCAGAATCATGGTCCTACTCCTACTGTGATAGCACCACCCCCACCTTCACACAATTCCAACCAACAAAACTCAAGTCACACCTAA 1506 0.4356 MSTEEKAMSEGHDAASCQRTVSLPVHKVDDPMGITEESSHARGWKRQNLFLEIPSRSSEGSSQDFVSIKMPQTPSPTPTPKRVNFLVSSRSVDAPMNKSPGPSASKTRPSIRNLLPKLSFKYLTSSDNEKAPAAATEGSSSGPREKPSISRTLSLTKIFTPRIKRTSSMPVDDISHSNSESAHAASVGASIQRRDAPGKIARSLSVPVNNKEKSLRRMDSFFRVVPSTPRVKEGIELSTASPANDSENDIADGEDIAEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKHEVRNLPVTLLRIQSVRARNAGASRSQLEDVNGYRVWQEVPVLVIVSMLAYFCFLEQLLVGKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASAQFALVVLFAHIFYSLVRFPNVRVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRLQALSEQNHGPTPTVIAPPPPSHNSNQQNSSHT 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0287 501 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Sto12g0287 501 PANTHER OS02G0165000 PROTEIN 25 493 - -
Sto12g0287 501 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Sto12g0287 501 SUPERFAMILY RING/U-box 259 314 - -
Sto12g0287 501 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 318 IPR013083 -
Sto12g0287 501 MobiDBLite consensus disorder prediction 166 191 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 54 72 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 54 111 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 1 24 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 170 186 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 126 152 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 477 501 - -
Sto12g0287 501 MobiDBLite consensus disorder prediction 79 111 - -
Sto12g0287 501 CDD RING_CH-C4HC3_MARCH 263 311 - -
Sto12g0287 501 SMART ringv_2 262 311 IPR011016 GO:0008270
Sto12g0287 501 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 25 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0287 Sto-Chr12 1736872 1740935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0287 249 317 C3H Transcription Factor Family AT2G37950 45.714 2.01e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0287 - - gmx:100815566 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0953 7 7518321 7521836 Sto12g0287 12 1736872 1740935 CCT
Sto12g0287 12 1736872 1740935 Sto12g0287 12 1736872 1740935 ECH