Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0285 ATGGCGGAACGTTCACTTCCTtgctctaaaaccctaaacccttcacaTCCAGCGGCCGCTGAAAACACTCAAATCCAGCAGCAAACTTCGACTGATCAACCTTGCGATGTCGTTTCGGGTGAGAAACGGAAGAGGGACGACTCAGACTCAGGAGGCGCAGATCCATCCCTCGATCCATTGTGGAAAACCTCCCTCTGTTCTTATTTCCGCCGCCAAGATAGCTCCTGTAGCCATGGCAGTGCCTGCCGCTTCGCCCACGGCGAAGAGGAGCTGCGCCCTCGCCCCGATAACACCTGGGACCCAACGTCTGAGCGTGCAAAGAAGGCCATGAAAACCGATGCCGGCCATAAACGCAGTGTTTCCATGGGTGTTATGATGACTGAATTTGTAGGTGATGATGCTGATGCGGACGACAAGGATGGTTCCAATCATGCGCTTAGAAAATGCTTGATGCATTTACCGAGGAAGTGGACTTCGGAGAACCTGAGGAATTTTCTCAATGAAAATGGAGTACCTTTTAAATCTGCAAAGAAAAAGATAGGTATGCCGGTAGGATTTGTCACTTTTGAAGATCAAGAACAGTTAAAGAATTCATCAAagGAACTGGATGGAAAAACAACTGGAAATGGAAGAATAGAGATAGAGGTTGCTGATGTCATTCCCCGatcatttgaaaaagaaaagaactcTAACGTGGCAGTTGATGGTGAGACAAATGGTGGCAATGTGGCAGTTGATGGTTCAATGTCAAAGACAAGAAGCCTACGTGATGTTGTGACTCCTCTGGCTCATATGGCCTATGTTGATCAGCTAGAGCACAAAAAAAGCTCTCTCATGAAGATTCTCAAAAAACTTACTAGTAATGCTCGTAAAGCTTGTCCCCATGGCATTTCCCTTCCTGAGTGGATTCTCCAGTCTAAATGCATAGGTGGTCTTCCTTGCAAACTAGAGGGCATTATTGGATCACCAATTGTAAATGGATATCGTAACAAGTGTGAATTTTCAGTTGGTTATTcgctaaaaggaaaaataacagtAGGGTTCATGCTTGGAAACTTCAGGGAGGGTGTAGCAGCAGTCGAGGAAGCTGTGGACTGCCCAAATGTTTCAAGTATTGCTCTCCAATATGCATCTATCTTTCAGGAATTTCTGCAGCATTCAAACCTACCAGTTTGGAACAGATATAAGAATAGCGGATTTTGGCGTCAATTGACAGTTCGAGAAGGGAGGACAAATGAAAAGGTTTCTAATGCTGAAAATTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGTGGGCTTTGATGATGTGCTTTTAACTGGTGAATTTGAGAAACTTGTTCAGGCATTTGTTACAGGAGCTACTGCAAGTTCTCCTTCACTGCCTCTTACAGCTCTGGTTGTACAGGATCACCAAGGAATATCTAATGTAGCGCCAGCTGATGCCCCACTGCGCTCTCTTCTCATTCCTAAAGCAGTTGGTGAGAAAATGGATGTAGACAACAGTGCCATGGATGTTAACActctagctgctgagaagttgTACTCACTTGCTGGAGATTGGGCTTGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTTACCTTGGCACATCGTGTTGGGATGGTGATTGGCATTGAAATGAATGCTTCTGCAGTATCTGACGCCCATAGGAATGCTGAGATTAATGGCATAAAAAATTGTAGATTTATATGTGCGAAGGCAGAaaacgtgatggggtctctGTTAAATGAGTACCTAGATGTGGCTAAGGAACAAGTTAATGTCCCTAGTTCCTCAGGAACTAGTATTGAAGAAGTTTCTGAAGGGAGAGTGTCCCATGGAAATGAAGATGGTGAACCAGCTTCTCAGTGTTCAGAAAATGAGAACCAGCAAGATCCAAGTGAGGTTCAGAAGGGCAGCGATTCTAAAAATGGGAATAGTTTGGTGCAACAAGTTAAAAATGTTGTTGCCATTGTTGATCCTCCACGTCCTGGACTCCATCCAACTGTGATCAAAGCTCTGAGGACTCATCCACGTCTGCGGAGGCTTGTTTACATATCTTGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACACCATCCCCTTCGaacattgaaaaaggaaagaaaaacaaCAGAGGATGGAGAAACATGAGCAGTGCAGGTCTTGCACGACATAGGACCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCTATAGCCGTTGATCTATTCCCACATACTGAACACTGTGAATTGGTGATGCTCCTTGAGAGGTGA 2337 0.4236 MAERSLPCSKTLNPSHPAAAENTQIQQQTSTDQPCDVVSGEKRKRDDSDSGGADPSLDPLWKTSLCSYFRRQDSSCSHGSACRFAHGEEELRPRPDNTWDPTSERAKKAMKTDAGHKRSVSMGVMMTEFVGDDADADDKDGSNHALRKCLMHLPRKWTSENLRNFLNENGVPFKSAKKKIGMPVGFVTFEDQEQLKNSSKELDGKTTGNGRIEIEVADVIPRSFEKEKNSNVAVDGETNGGNVAVDGSMSKTRSLRDVVTPLAHMAYVDQLEHKKSSLMKILKKLTSNARKACPHGISLPEWILQSKCIGGLPCKLEGIIGSPIVNGYRNKCEFSVGYSLKGKITVGFMLGNFREGVAAVEEAVDCPNVSSIALQYASIFQEFLQHSNLPVWNRYKNSGFWRQLTVREGRTNEKVSNAENFGGIAEVMLIVQVSTVGFDDVLLTGEFEKLVQAFVTGATASSPSLPLTALVVQDHQGISNVAPADAPLRSLLIPKAVGEKMDVDNSAMDVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICAKAENVMGSLLNEYLDVAKEQVNVPSSSGTSIEEVSEGRVSHGNEDGEPASQCSENENQQDPSEVQKGSDSKNGNSLVQQVKNVVAIVDPPRPGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPSNIEKGKKNNRGWRNMSSAGLARHRTKSMPISEAFQPIKAIAVDLFPHTEHCELVMLLER 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0285 778 SUPERFAMILY RNA-binding domain, RBD 152 222 IPR035979 GO:0003676
Sto12g0285 778 ProSitePatterns RNA methyltransferase trmA family signature 1. 673 705 IPR030390 -
Sto12g0285 778 MobiDBLite consensus disorder prediction 609 658 - -
Sto12g0285 778 Gene3D - 149 235 IPR012677 -
Sto12g0285 778 MobiDBLite consensus disorder prediction 93 117 - -
Sto12g0285 778 MobiDBLite consensus disorder prediction 8 36 - -
Sto12g0285 778 ProSiteProfiles Zinc finger C3H1-type profile. 60 89 IPR000571 GO:0046872
Sto12g0285 778 MobiDBLite consensus disorder prediction 37 52 - -
Sto12g0285 778 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A 76 778 - -
Sto12g0285 778 Gene3D - 329 497 - -
Sto12g0285 778 MobiDBLite consensus disorder prediction 1 56 - -
Sto12g0285 778 Coils Coil 268 288 - -
Sto12g0285 778 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 76 778 IPR045850 -
Sto12g0285 778 MobiDBLite consensus disorder prediction 631 658 - -
Sto12g0285 778 Pfam tRNA (Uracil-5-)-methyltransferase 670 713 IPR010280 GO:0006396|GO:0008173
Sto12g0285 778 Pfam Methyltransferase domain 534 592 IPR025714 -
Sto12g0285 778 CDD RRM_SF 149 215 - -
Sto12g0285 778 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 61 88 IPR000571 GO:0046872
Sto12g0285 778 MobiDBLite consensus disorder prediction 93 115 - -
Sto12g0285 778 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 261 778 IPR029063 -
Sto12g0285 778 CDD AdoMet_MTases 536 588 - -
Sto12g0285 778 SUPERFAMILY CCCH zinc finger 59 93 IPR036855 GO:0046872
Sto12g0285 778 Gene3D Vaccinia Virus protein VP39 498 777 IPR029063 -
Sto12g0285 778 Gene3D - 56 94 - -
Sto12g0285 778 SMART c3hfinal6 60 88 IPR000571 GO:0046872
Sto12g0285 778 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 258 778 IPR010280 GO:0006396|GO:0008173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto12g0285 tRNA_U5-meth_tr 2.6e-06 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0285 K15332 - qsu:112035283 992.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0285 12 1727284 1732546 Sto12g0285 12 1727284 1732546 ECH