Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto12g0285 | ATGGCGGAACGTTCACTTCCTtgctctaaaaccctaaacccttcacaTCCAGCGGCCGCTGAAAACACTCAAATCCAGCAGCAAACTTCGACTGATCAACCTTGCGATGTCGTTTCGGGTGAGAAACGGAAGAGGGACGACTCAGACTCAGGAGGCGCAGATCCATCCCTCGATCCATTGTGGAAAACCTCCCTCTGTTCTTATTTCCGCCGCCAAGATAGCTCCTGTAGCCATGGCAGTGCCTGCCGCTTCGCCCACGGCGAAGAGGAGCTGCGCCCTCGCCCCGATAACACCTGGGACCCAACGTCTGAGCGTGCAAAGAAGGCCATGAAAACCGATGCCGGCCATAAACGCAGTGTTTCCATGGGTGTTATGATGACTGAATTTGTAGGTGATGATGCTGATGCGGACGACAAGGATGGTTCCAATCATGCGCTTAGAAAATGCTTGATGCATTTACCGAGGAAGTGGACTTCGGAGAACCTGAGGAATTTTCTCAATGAAAATGGAGTACCTTTTAAATCTGCAAAGAAAAAGATAGGTATGCCGGTAGGATTTGTCACTTTTGAAGATCAAGAACAGTTAAAGAATTCATCAAagGAACTGGATGGAAAAACAACTGGAAATGGAAGAATAGAGATAGAGGTTGCTGATGTCATTCCCCGatcatttgaaaaagaaaagaactcTAACGTGGCAGTTGATGGTGAGACAAATGGTGGCAATGTGGCAGTTGATGGTTCAATGTCAAAGACAAGAAGCCTACGTGATGTTGTGACTCCTCTGGCTCATATGGCCTATGTTGATCAGCTAGAGCACAAAAAAAGCTCTCTCATGAAGATTCTCAAAAAACTTACTAGTAATGCTCGTAAAGCTTGTCCCCATGGCATTTCCCTTCCTGAGTGGATTCTCCAGTCTAAATGCATAGGTGGTCTTCCTTGCAAACTAGAGGGCATTATTGGATCACCAATTGTAAATGGATATCGTAACAAGTGTGAATTTTCAGTTGGTTATTcgctaaaaggaaaaataacagtAGGGTTCATGCTTGGAAACTTCAGGGAGGGTGTAGCAGCAGTCGAGGAAGCTGTGGACTGCCCAAATGTTTCAAGTATTGCTCTCCAATATGCATCTATCTTTCAGGAATTTCTGCAGCATTCAAACCTACCAGTTTGGAACAGATATAAGAATAGCGGATTTTGGCGTCAATTGACAGTTCGAGAAGGGAGGACAAATGAAAAGGTTTCTAATGCTGAAAATTTTGGTGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGTGGGCTTTGATGATGTGCTTTTAACTGGTGAATTTGAGAAACTTGTTCAGGCATTTGTTACAGGAGCTACTGCAAGTTCTCCTTCACTGCCTCTTACAGCTCTGGTTGTACAGGATCACCAAGGAATATCTAATGTAGCGCCAGCTGATGCCCCACTGCGCTCTCTTCTCATTCCTAAAGCAGTTGGTGAGAAAATGGATGTAGACAACAGTGCCATGGATGTTAACActctagctgctgagaagttgTACTCACTTGCTGGAGATTGGGCTTGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCCTTACCTTGGCACATCGTGTTGGGATGGTGATTGGCATTGAAATGAATGCTTCTGCAGTATCTGACGCCCATAGGAATGCTGAGATTAATGGCATAAAAAATTGTAGATTTATATGTGCGAAGGCAGAaaacgtgatggggtctctGTTAAATGAGTACCTAGATGTGGCTAAGGAACAAGTTAATGTCCCTAGTTCCTCAGGAACTAGTATTGAAGAAGTTTCTGAAGGGAGAGTGTCCCATGGAAATGAAGATGGTGAACCAGCTTCTCAGTGTTCAGAAAATGAGAACCAGCAAGATCCAAGTGAGGTTCAGAAGGGCAGCGATTCTAAAAATGGGAATAGTTTGGTGCAACAAGTTAAAAATGTTGTTGCCATTGTTGATCCTCCACGTCCTGGACTCCATCCAACTGTGATCAAAGCTCTGAGGACTCATCCACGTCTGCGGAGGCTTGTTTACATATCTTGTAATCCTGAAAGTTTGGTGGCAAATGCTATTGAGCTTTGTACACCATCCCCTTCGaacattgaaaaaggaaagaaaaacaaCAGAGGATGGAGAAACATGAGCAGTGCAGGTCTTGCACGACATAGGACCAAGTCTATGCCTATCTCAGAGGCCTTCCAACCCATAAAAGCTATAGCCGTTGATCTATTCCCACATACTGAACACTGTGAATTGGTGATGCTCCTTGAGAGGTGA | 2337 | 0.4236 | MAERSLPCSKTLNPSHPAAAENTQIQQQTSTDQPCDVVSGEKRKRDDSDSGGADPSLDPLWKTSLCSYFRRQDSSCSHGSACRFAHGEEELRPRPDNTWDPTSERAKKAMKTDAGHKRSVSMGVMMTEFVGDDADADDKDGSNHALRKCLMHLPRKWTSENLRNFLNENGVPFKSAKKKIGMPVGFVTFEDQEQLKNSSKELDGKTTGNGRIEIEVADVIPRSFEKEKNSNVAVDGETNGGNVAVDGSMSKTRSLRDVVTPLAHMAYVDQLEHKKSSLMKILKKLTSNARKACPHGISLPEWILQSKCIGGLPCKLEGIIGSPIVNGYRNKCEFSVGYSLKGKITVGFMLGNFREGVAAVEEAVDCPNVSSIALQYASIFQEFLQHSNLPVWNRYKNSGFWRQLTVREGRTNEKVSNAENFGGIAEVMLIVQVSTVGFDDVLLTGEFEKLVQAFVTGATASSPSLPLTALVVQDHQGISNVAPADAPLRSLLIPKAVGEKMDVDNSAMDVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICAKAENVMGSLLNEYLDVAKEQVNVPSSSGTSIEEVSEGRVSHGNEDGEPASQCSENENQQDPSEVQKGSDSKNGNSLVQQVKNVVAIVDPPRPGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPSNIEKGKKNNRGWRNMSSAGLARHRTKSMPISEAFQPIKAIAVDLFPHTEHCELVMLLER | 778 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto12g0285 | 778 | SUPERFAMILY | RNA-binding domain, RBD | 152 | 222 | IPR035979 | GO:0003676 | |
Sto12g0285 | 778 | ProSitePatterns | RNA methyltransferase trmA family signature 1. | 673 | 705 | IPR030390 | - | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 609 | 658 | - | - | |
Sto12g0285 | 778 | Gene3D | - | 149 | 235 | IPR012677 | - | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 93 | 117 | - | - | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 8 | 36 | - | - | |
Sto12g0285 | 778 | ProSiteProfiles | Zinc finger C3H1-type profile. | 60 | 89 | IPR000571 | GO:0046872 | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 37 | 52 | - | - | |
Sto12g0285 | 778 | PANTHER | TRNA (URACIL-5-)-METHYLTRANSFERASE HOMOLOG A | 76 | 778 | - | - | |
Sto12g0285 | 778 | Gene3D | - | 329 | 497 | - | - | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
Sto12g0285 | 778 | Coils | Coil | 268 | 288 | - | - | |
Sto12g0285 | 778 | PANTHER | TRNA (URACIL-5-)-METHYLTRANSFERASE | 76 | 778 | IPR045850 | - | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 631 | 658 | - | - | |
Sto12g0285 | 778 | Pfam | tRNA (Uracil-5-)-methyltransferase | 670 | 713 | IPR010280 | GO:0006396|GO:0008173 | |
Sto12g0285 | 778 | Pfam | Methyltransferase domain | 534 | 592 | IPR025714 | - | |
Sto12g0285 | 778 | CDD | RRM_SF | 149 | 215 | - | - | |
Sto12g0285 | 778 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 61 | 88 | IPR000571 | GO:0046872 | |
Sto12g0285 | 778 | MobiDBLite | consensus disorder prediction | 93 | 115 | - | - | |
Sto12g0285 | 778 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 261 | 778 | IPR029063 | - | |
Sto12g0285 | 778 | CDD | AdoMet_MTases | 536 | 588 | - | - | |
Sto12g0285 | 778 | SUPERFAMILY | CCCH zinc finger | 59 | 93 | IPR036855 | GO:0046872 | |
Sto12g0285 | 778 | Gene3D | Vaccinia Virus protein VP39 | 498 | 777 | IPR029063 | - | |
Sto12g0285 | 778 | Gene3D | - | 56 | 94 | - | - | |
Sto12g0285 | 778 | SMART | c3hfinal6 | 60 | 88 | IPR000571 | GO:0046872 | |
Sto12g0285 | 778 | ProSiteProfiles | SAM-dependent methyltransferase RNA m(5)U-type domain profile. | 258 | 778 | IPR010280 | GO:0006396|GO:0008173 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Sto12g0285 | tRNA_U5-meth_tr | 2.6e-06 | CL0063 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto12g0285 | K15332 | - | qsu:112035283 | 992.645 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto12g0285 | 12 | 1727284 | 1732546 | Sto12g0285 | 12 | 1727284 | 1732546 | ECH |