Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0284 ATGGGGAATATCCCTTCCACCATCGACGCCAACCACAACCGTAGCGGCAGCGTCGCTAATCAAAGCCGCAGCCGCAGCCGGCGCCACCACCCTCTTCAGCCTCCGCAATCGCAAATTGCTGGAAGCAACGACGTTTCCGCCGATTCAAACGCCGTTACGCCCTCGTCCCCATGTGGGCCCCTTTCCCCAACGAGCGCACCTTCTGTTGAGCATCAGAAAGCGGTGACGATTAGGAATAGTGTGAACATCAAGAAGGAGACACTGCGGATTGAGCCCGATCAACATAACCCTGGCACCTTCCTTCTAGCTTTCACCTTTGATGCCACTACGCCTGGAAGCATTACAGTTATGTTTTTTGCTAAGGAAACTATAGATGGTAATCTGATAGCAGTAAAGGAAAGCATGCTTAAACAAATTTCCATGCCTTTTGAGCAAGGTCTCTGTCAGAGGTTTATTCAACCTTCTGGAACTGGAATTGACTTCTCAATGTTAGAGCAGACAGGACTGACAAAAGAAGGTGATACTGAAGTTTATCCTCTTGTGCTCAAGGCCGAGGCTCTGCCATCAAACCCTCATGAAACTGATGGAAGCCCATCTTTTCAAATTACTCTGGCAAGTTTTGTGAACAAAGAGAAAGATGACTACAAGGTCCAAGTAATGAAACAGATTCTCTGGATTAAGGGTAAAAGGTATGAGCTGCAGGAGATATATGGCATTGAGAATGCAAATGATGGAAATGCAAGTGATGAAACGGAGTCTGGAAGAGAATGTGTTGTATGCCTATCCGCACCACGAGAAATAACGGTTCTCCCTTGCCGACACATGTGCATGTGCAGTGGCTGTACCAAGCTCTTGACGTCCCCGAACTGCCCCATATGTCGCCATCCAGTTGAGCGGCTTTTGGAAATTATGGTGGATAATGGATCTGGTACACTTGATATAGAGCTTCCACCACAGCTATCTCCAACATGCTGTCCATTCCTCACCACTTTCTTTGCTGCACGGCCACCCTTGACTTTGATGCTGTAA 1029 0.4781 MGNIPSTIDANHNRSGSVANQSRSRSRRHHPLQPPQSQIAGSNDVSADSNAVTPSSPCGPLSPTSAPSVEHQKAVTIRNSVNIKKETLRIEPDQHNPGTFLLAFTFDATTPGSITVMFFAKETIDGNLIAVKESMLKQISMPFEQGLCQRFIQPSGTGIDFSMLEQTGLTKEGDTEVYPLVLKAEALPSNPHETDGSPSFQITLASFVNKEKDDYKVQVMKQILWIKGKRYELQEIYGIENANDGNASDETESGRECVVCLSAPREITVLPCRHMCMCSGCTKLLTSPNCPICRHPVERLLEIMVDNGSGTLDIELPPQLSPTCCPFLTTFFAARPPLTLML 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0284 342 PANTHER - 49 310 - -
Sto12g0284 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 237 305 IPR013083 -
Sto12g0284 342 ProSiteProfiles Zinc finger RING-type profile. 257 294 IPR001841 -
Sto12g0284 342 MobiDBLite consensus disorder prediction 1 73 - -
Sto12g0284 342 MobiDBLite consensus disorder prediction 31 73 - -
Sto12g0284 342 SUPERFAMILY RING/U-box 256 300 - -
Sto12g0284 342 MobiDBLite consensus disorder prediction 1 22 - -
Sto12g0284 342 Pfam Zinc finger, C3HC4 type (RING finger) 255 299 - -
Sto12g0284 342 PANTHER MAHOGUNIN 49 310 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0284 Sto-Chr12 1723540 1725611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0284 58 276 C3H Transcription Factor Family AT3G09770 54.626 1.77e-77 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0284 - - gmx:100816136 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0284 12 1723540 1725611 Sto12g0284 12 1723540 1725611 ECH